Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002595.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

11 .. 766

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggatgagatggaggataatgggattggcgccaatgaggttacttatggagttatgattgaaggttattgtaaggagaagaagtcgggtgaagctgttaatttgcttaatgatatggcggagaagaggtatataccgagctcgacgctctgttgtaaggtgattgatgtgttgtgttgcgaagggaaggtggaggatgcttgtgtactgtggaagaggcttttgaagaagaattgcacgccggataatgccgtaatgggcacactcatttactggctgtgtaaggagggagaagtgtgggaagccaggaaattgtttgatcagtttgagacgagtgagcctccagatgtcatgacttacaacgtgcttatttctggaatgtgtgaagtgggggagttgtgtgaggcggggaggttatgggatgacatggtggagaaaggatattctccgaattcttttacatataatgtattgatcaaaggattctgtaagattggaaaagcaaaggagggagttaggattttggacgagatattcgaaaaaggctgtttgccaaacaagtctacttatgctatgttgattgaggggctctgtgactcaggagaggaagctgaaatcactagagtaatatctatggcaatgtcaagtggacacattgacagtgattcctgggagcttttccttacaatggttattggtgatttggattctggggaaagtgttctaaatagaatacagctggagaatgctgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

251

Amino Acids

28.02

Weight (kDa)

4.46

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	2 cut(s)	119, 407
AcsI	RAATTY	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	688
AgsI	TTSAA	2 cut(s)	62, 226
AjnI	CCWGG	2 cut(s)	305, 668
AluBI	AGCT	5 cut(s)	95, 141, 611, 676, 739
AluI	AGCT	5 cut(s)	95, 141, 611, 676, 739
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	101, 172, 710
AsuII	TTCGAA	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	2 cut(s)	143, 591
Bbv12I	GWGCWC	1 cut(s)	143
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	307, 670
BclI	TGATCA	2 cut(s)	319, 474
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	33
Bme1390I	CCNGG	2 cut(s)	307, 670
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	307, 670
BmsI	GCATC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpmI	CTGGAG	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	669
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	307, 670
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	3 cut(s)	10, 202, 427
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmAI	GTCTC	1 cut(s)	323
BsmBI	CGTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	751
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	3 cut(s)	143, 263, 591
Bsp143I	GATC	2 cut(s)	319, 474
BspACI	CCGC	2 cut(s)	119, 407
BspCNI	CTCAG	1 cut(s)	611
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	2 cut(s)	319, 474
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	307, 670
Bst4CI	ACNGT	2 cut(s)	210, 662
Bst6I	CTCTTC	2 cut(s)	119, 209
BstACI	GRCGYC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	10, 202, 427
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	2 cut(s)	322, 477
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	319, 474
BstNI	CCWGG	2 cut(s)	307, 670
BstSCI	CCNGG	2 cut(s)	305, 668
BstSLI	GKGCMC	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	10, 202, 427
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	1 cut(s)	32
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	2 cut(s)	352, 427
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	598
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	2 cut(s)	321, 476
DpnII	GATC	2 cut(s)	319, 474
Eam1104I	CTCTTC	2 cut(s)	119, 209
EarI	CTCTTC	2 cut(s)	119, 209
EciI	GGCGGA	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	2 cut(s)	143, 591
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	305, 668
EcoT38I	GRGCYC	2 cut(s)	143, 591
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	2 cut(s)	355, 430
FatI	CATG	2 cut(s)	351, 426
FauI	CCCGC	1 cut(s)	400
FbaI	TGATCA	2 cut(s)	319, 474
FblI	GTMKAC	1 cut(s)	563
FokI	GGATG	3 cut(s)	17, 209, 434
FriOI	GRGCYC	2 cut(s)	143, 591
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	33
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	355, 430
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	4 cut(s)	483, 596, 665, 707
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	101, 172, 710
Hpy166II	GTNNAC	3 cut(s)	206, 564, 650
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	4 cut(s)	344, 352, 375, 600
Hpy8I	GTNNAC	3 cut(s)	206, 564, 650
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	56, 176, 181
HpyCH4III	ACNGT	2 cut(s)	210, 662
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	598
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	355, 430
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
Ksp22I	TGATCA	2 cut(s)	319, 474
Kzo9I	GATC	2 cut(s)	319, 474
LmnI	GCTCC	1 cut(s)	673
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	40, 593
MalI	GATC	2 cut(s)	321, 476
MboI	GATC	2 cut(s)	319, 474
MboII	GAAGA	5 cut(s)	91, 136, 226, 238, 241
MhlI	GDGCHC	3 cut(s)	143, 263, 591
MluCI	AATT	4 cut(s)	100, 232, 311, 451
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	2 cut(s)	99, 108
MspA1I	CMGCKG	1 cut(s)	739
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	307, 670
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	2 cut(s)	307, 670
NarI	GGCGCC	1 cut(s)	30
NdeII	GATC	2 cut(s)	319, 474
NlaIII	CATG	2 cut(s)	355, 430
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	593
NspV	TTCGAA	1 cut(s)	537
PagI	TCATGA	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	1 cut(s)	751
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	483, 665, 707
PleI	GAGTC	1 cut(s)	590
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	305, 668
PspGI	CCWGG	2 cut(s)	305, 668
PspN4I	GGNNCC	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	739
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	99, 108
Sau3AI	GATC	2 cut(s)	319, 474
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	307, 670
SduI	GDGCHC	3 cut(s)	143, 263, 591
SfaNI	GCATC	1 cut(s)	187
SfoI	GGCGCC	1 cut(s)	31
SfuI	TTCGAA	1 cut(s)	537
Sse9I	AATT	4 cut(s)	100, 232, 311, 451
SsiI	CCGC	2 cut(s)	119, 407
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	621
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	305, 668
TaaI	ACNGT	2 cut(s)	210, 662
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	143, 537
TasI	AATT	4 cut(s)	100, 232, 311, 451
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	3 cut(s)	483, 665, 707
Tru1I	TTAA	2 cut(s)	99, 108
Tru9I	TTAA	2 cut(s)	99, 108
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	593
TspRI	CASTG	1 cut(s)	667
XapI	RAATTY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.