Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

40517093 .. 40518700

Gene Structure 1608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGCTACTGCGCCGGAACCTCTCCCCCAAACCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCCCTTCTCCACCTCCACCTCCTCCGCCGTCGATTTTCTCCACTCCTACACCGTCACTCCTCCGATCCAAGACTGGCCCCAACACCTCCACCCGAAGCGCCTCATCTCCCTCATCACCCGCGAGCCCAAACTCGACCTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGGATTCCACCATAATTACCACACCTACCACGCCATCATCCGCCGCCTCCTCCGCTCCCGCGCTTTTCACCTCATCGACCCCCTCCTCTCCGACCTCCGCACCTCCAATCTCCGATGCGGCGAGGACCTCTTCATCTCCCTAATCCGCAACTACGGCGTCGTTTCACGCCCCAAACTCGCATTCAAGACATTTATCACCATTCCGAAATTCGGCGTACAACGCTCCGTGAGGTCGTTGAATGCGCTGCTGAACGCTTTGGTTCAGAATCATGAGTATAGATTGGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGTTTCGGGGTGGCGCCGAATGTGTTTAGTTGTAATATATTGATCAAAGCACTGTGCAAGAGAAATGATTTGGAGACTGCACACCAGGTGCTCGATGAAATGCCTGCGATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGGTTATGTTTCGCGGCGCGATGTGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTGTCCTGATGTGACTACATATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGGCGCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGAAGTCGGGTGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGTACTGTGGAAGAGGCTTTTGAAGAAGAATTGTACACCGGATAATGCGGTGTTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAGTATGGGAAGCCAGGAAATTATTTGATCAGTTTGAGACGAGTGAGCCTCCGGATGTCATGACTTACAACGTGCTTATTTCTAGAATGTGTGATGTGGGGGAGTTGTGGGAGGCCGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGTTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATGTTCGAAAAAGGCTATTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCGGTAGAGGATGCTGAAATGGCTAGAGTAATATCTATGTCAATATCAAGTGGAGACATTAACAGTGATTCCTGGGATCTTTTCCTTACTAAAGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAGACAGATTACTACTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

535

Amino Acids

60.52

Weight (kDa)

6.58

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	178 - 239	2.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	187 - 218	2.9e-08	PPR repeat
PPR_2	PF13041	190 - 238	9.9e-15	PPR repeat family
PPR_2	PF13041	225 - 274	1.1e-12	PPR repeat family
PPR_3	PF13812	249 - 309	4.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	257 - 289	2.6e-09	PPR repeat
PPR_2	PF13041	260 - 309	2.3e-16	PPR repeat family
PPR	PF01535	264 - 293	3e-08	PPR repeat
PPR_1	PF12854	292 - 324	2.4e-06	PPR repeat
PPR_2	PF13041	296 - 332	4.9e-07	PPR repeat family
PPR	PF01535	298 - 327	2.3e-06	PPR repeat
PPR_1	PF12854	361 - 392	9.3e-06	PPR repeat
PPR_1	PF12854	399 - 428	4.6e-07	PPR repeat
PPR_2	PF13041	399 - 448	3.6e-19	PPR repeat family
PPR_3	PF13812	399 - 446	1.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	422 - 479	1.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	430 - 462	1.4e-11	PPR repeat
PPR	PF01535	437 - 466	2.9e-07	PPR repeat
PPR_2	PF13041	437 - 483	1.6e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	565, 734, 881
AccBSI	CCGCTC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	1415
AccII	CGCG	4 cut(s)	183, 300, 718, 723
AccIII	TCCGGA	1 cut(s)	1195
AclWI	GGATC	2 cut(s)	121, 1533
AcsI	RAATTY	2 cut(s)	446, 1303
AcyI	GRCGYC	3 cut(s)	396, 566, 882
AdeI	CACNNNGTG	2 cut(s)	532, 640
AfaI	GTAC	3 cut(s)	456, 1059, 1090
AfiI	CCNNNNNNNGG	2 cut(s)	449, 662
AgsI	TTSAA	4 cut(s)	424, 478, 914, 1078
AjnI	CCWGG	3 cut(s)	636, 1157, 1520
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AloI	GAACNNNNNNTCC	2 cut(s)	1370, 1402
AluBI	AGCT	3 cut(s)	832, 917, 993
AluI	AGCT	3 cut(s)	832, 917, 993
Alw21I	GWGCWC	2 cut(s)	645, 995
Alw26I	GTCTC	3 cut(s)	620, 1175, 1497
AlwI	GGATC	2 cut(s)	121, 1533
Aor13HI	TCCGGA	1 cut(s)	1195
AoxI	GGCC	2 cut(s)	137, 1257
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	2 cut(s)	446, 1303
ArsI	GACNNNNNNTTYG	2 cut(s)	1370, 1402
Asp700I	GAANNNNTTC	1 cut(s)	1572
AspLEI	GCGC	8 cut(s)	12, 162, 302, 484, 568, 723, 884, 1000
AspS9I	GGNCC	2 cut(s)	138, 364
AsuC2I	CCSGG	2 cut(s)	240, 1261
AsuHPI	GGTGA	9 cut(s)	46, 169, 299, 427, 694, 764, 953, 1024, 1562
AsuII	TTCGAA	1 cut(s)	1389
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	2 cut(s)	675, 1115
BanI	GGYRCC	3 cut(s)	565, 734, 881
BanII	GRGCYC	3 cut(s)	189, 995, 1443
Bbv12I	GWGCWC	2 cut(s)	645, 995
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	5 cut(s)	281, 655, 799, 803, 856
BceAI	ACGGC	3 cut(s)	44, 74, 409
BciT130I	CCWGG	3 cut(s)	638, 1159, 1522
BciVI	GTATCC	1 cut(s)	1552
BclI	TGATCA	3 cut(s)	594, 1171, 1326
BcnI	CCSGG	2 cut(s)	240, 1261
BcoDI	GTCTC	3 cut(s)	620, 1175, 1497
BfaI	CTAG	3 cut(s)	1227, 1473, 1577
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	4 cut(s)	163, 569, 885, 1001
BfuI	GTATCC	1 cut(s)	1552
BisI	GCNGC	4 cut(s)	283, 358, 485, 719
BlsI	GCNGC	4 cut(s)	284, 359, 486, 720
Bme1390I	CCNGG	5 cut(s)	240, 638, 1159, 1261, 1522
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	138, 364
BmiI	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
BmrFI	CCNGG	5 cut(s)	240, 638, 1159, 1261, 1522
BmrI	ACTGGG	1 cut(s)	1572
BmsI	GCATC	3 cut(s)	344, 1039, 1450
BmuI	ACTGGG	1 cut(s)	1572
BplI	GAGNNNNNCTC	2 cut(s)	1177, 1209
Bpu14I	TTCGAA	1 cut(s)	1389
BpuMI	CCSGG	2 cut(s)	240, 1261
BsaHI	GRCGYC	3 cut(s)	396, 566, 882
BsaJI	CCNNGG	2 cut(s)	238, 1521
BsaWI	WCCGGW	2 cut(s)	1093, 1195
BsaXI	ACNNNNNCTCC	6 cut(s)	103, 133, 209, 239, 965, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 662
Bse1I	ACTGG	4 cut(s)	140, 1130, 1567, 1596
BseAI	TCCGGA	1 cut(s)	1195
BseBI	CCWGG	3 cut(s)	638, 1159, 1522
BseDI	CCNNGG	2 cut(s)	238, 1521
BseGI	GGATG	8 cut(s)	276, 814, 862, 1054, 1204, 1279, 1298, 1465
BseLI	CCNNNNNNNGG	2 cut(s)	449, 662
BseNI	ACTGG	4 cut(s)	140, 1130, 1567, 1596
BseRI	GAGGAG	5 cut(s)	32, 73, 111, 278, 314
BseSI	GKGCMC	2 cut(s)	675, 1115
BseXI	GCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	4 cut(s)	183, 300, 718, 723
BshFI	GGCC	2 cut(s)	139, 1259
BshNI	GGYRCC	3 cut(s)	565, 734, 881
BsiHKAI	GWGCWC	2 cut(s)	645, 995
BsiSI	CCGG	5 cut(s)	13, 240, 1094, 1196, 1260
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	449, 662
BsmAI	GTCTC	3 cut(s)	620, 1175, 1497
BsmBI	CGTCTC	1 cut(s)	1175
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	3 cut(s)	419, 484, 1603
BsnI	GGCC	2 cut(s)	139, 1259
Bsp119I	TTCGAA	1 cut(s)	1389
Bsp1286I	GDGCHC	6 cut(s)	189, 645, 675, 995, 1115, 1443
Bsp13I	TCCGGA	1 cut(s)	1195
Bsp1407I	TGTACA	1 cut(s)	1088
Bsp143I	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
BspANI	GGCC	2 cut(s)	139, 1259
BspEI	TCCGGA	1 cut(s)	1195
BspFNI	CGCG	4 cut(s)	183, 300, 718, 723
BspHI	TCATGA	2 cut(s)	508, 1203
BspLI	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
BspPI	GGATC	2 cut(s)	121, 1533
BspT104I	TTCGAA	1 cut(s)	1389
BspT107I	GGYRCC	3 cut(s)	565, 734, 881
BsrBI	CCGCTC	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	1088
BsrI	ACTGG	4 cut(s)	140, 1130, 1567, 1596
BssECI	CCNNGG	2 cut(s)	238, 1521
BssMI	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
BssNI	GRCGYC	3 cut(s)	396, 566, 882
Bst2UI	CCWGG	3 cut(s)	638, 1159, 1522
Bst4CI	ACNGT	5 cut(s)	115, 545, 606, 1062, 1514
Bst6I	CTCTTC	3 cut(s)	374, 971, 1061
BstACI	GRCGYC	3 cut(s)	396, 566, 882
BstAUI	TGTACA	1 cut(s)	1088
BstBI	TTCGAA	1 cut(s)	1389
BstC8I	GCNNGC	3 cut(s)	185, 657, 1115
BstF5I	GGATG	8 cut(s)	276, 814, 862, 1054, 1204, 1279, 1298, 1465
BstFNI	CGCG	4 cut(s)	183, 300, 718, 723
BstH2I	RGCGCY	4 cut(s)	163, 569, 885, 1001
BstHHI	GCGC	8 cut(s)	12, 162, 302, 484, 568, 723, 884, 1000
BstKTI	GATC	5 cut(s)	129, 597, 1174, 1329, 1528
BstMAI	GTCTC	3 cut(s)	620, 1175, 1497
BstMBI	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
BstMWI	GCNNNNNNNGC	5 cut(s)	291, 393, 459, 829, 1469
BstNI	CCWGG	3 cut(s)	638, 1159, 1522
BstSCI	CCNGG	5 cut(s)	238, 636, 1157, 1259, 1520
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	2 cut(s)	675, 1115
BstUI	CGCG	4 cut(s)	183, 300, 718, 723
BstV1I	GCAGC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	1525
BstYI	RGATCY	1 cut(s)	1525
BsuI	GTATCC	1 cut(s)	1552
BsuRI	GGCC	2 cut(s)	139, 1259
BtgZI	GCGATG	2 cut(s)	674, 738
BtsCI	GGATG	8 cut(s)	276, 814, 862, 1054, 1204, 1279, 1298, 1465
BtsIMutI	CAGTG	2 cut(s)	602, 1519
Cac8I	GCNNGC	3 cut(s)	185, 657, 1115
CciI	TCATGA	2 cut(s)	508, 1203
CfoI	GCGC	8 cut(s)	12, 162, 302, 484, 568, 723, 884, 1000
Cfr13I	GGNCC	2 cut(s)	138, 364
CseI	GACGC	1 cut(s)	385
CsiI	ACCWGGT	1 cut(s)	636
Csp6I	GTAC	3 cut(s)	455, 1058, 1089
CviAII	CATG	3 cut(s)	509, 1204, 1279
CviQI	GTAC	3 cut(s)	455, 1058, 1089
DinI	GGCGCC	2 cut(s)	567, 883
DpnI	GATC	5 cut(s)	128, 596, 1173, 1328, 1527
DpnII	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
DraIII	CACNNNGTG	2 cut(s)	532, 640
Eam1104I	CTCTTC	3 cut(s)	374, 971, 1061
EarI	CTCTTC	3 cut(s)	374, 971, 1061
EciI	GGCGGA	2 cut(s)	76, 269
Ecl136II	GAGCTC	1 cut(s)	993
Eco24I	GRGCYC	3 cut(s)	189, 995, 1443
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	1 cut(s)	993
EcoICRI	GAGCTC	1 cut(s)	993
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	1303
EcoRII	CCWGG	3 cut(s)	636, 1157, 1520
EcoT38I	GRGCYC	3 cut(s)	189, 995, 1443
EgeI	GGCGCC	2 cut(s)	567, 883
EheI	GGCGCC	2 cut(s)	567, 883
Esp3I	CGTCTC	1 cut(s)	1175
FaeI	CATG	3 cut(s)	512, 1207, 1282
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	508, 1203, 1278
FauI	CCCGC	2 cut(s)	188, 305
FbaI	TGATCA	3 cut(s)	594, 1171, 1326
FblI	GTMKAC	1 cut(s)	1415
Fnu4HI	GCNGC	4 cut(s)	283, 358, 485, 719
FokI	GGATG	8 cut(s)	263, 821, 869, 1061, 1211, 1286, 1305, 1472
FriOI	GRGCYC	3 cut(s)	189, 995, 1443
Fsp4HI	GCNGC	4 cut(s)	283, 358, 485, 719
FspBI	CTAG	3 cut(s)	1227, 1473, 1577
GlaI	GCGC	8 cut(s)	11, 161, 301, 483, 567, 722, 883, 999
GluI	GCNGC	4 cut(s)	283, 358, 485, 719
HaeII	RGCGCY	4 cut(s)	163, 569, 885, 1001
HaeIII	GGCC	2 cut(s)	139, 1259
HapII	CCGG	5 cut(s)	13, 240, 1094, 1196, 1260
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	8 cut(s)	12, 162, 302, 484, 568, 723, 884, 1000
Hin1I	GRCGYC	3 cut(s)	396, 566, 882
Hin1II	CATG	3 cut(s)	512, 1207, 1282
Hin6I	GCGC	8 cut(s)	10, 160, 300, 482, 566, 721, 882, 998
HinP1I	GCGC	8 cut(s)	10, 160, 300, 482, 566, 721, 882, 998
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	5 cut(s)	243, 505, 1335, 1448, 1517
HpaII	CCGG	5 cut(s)	13, 240, 1094, 1196, 1260
HphI	GGTGA	9 cut(s)	46, 169, 299, 427, 694, 764, 953, 1024, 1562
Hpy166II	GTNNAC	4 cut(s)	526, 1058, 1091, 1416
Hpy188I	TCNGA	7 cut(s)	126, 331, 353, 444, 504, 540, 1302
Hpy188III	TCNNGA	7 cut(s)	424, 509, 779, 1196, 1204, 1227, 1577
Hpy8I	GTNNAC	4 cut(s)	526, 1058, 1091, 1416
Hpy99I	CGWCG	2 cut(s)	95, 401
HpyAV	CCTTC	6 cut(s)	43, 76, 1028, 1033, 1132, 1351
HpyCH4III	ACNGT	5 cut(s)	115, 545, 606, 1062, 1514
HpyCH4IV	ACGT	1 cut(s)	1215
HpyCH4V	TGCA	2 cut(s)	609, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	291, 393, 459, 829, 1469
HpySE526I	ACGT	1 cut(s)	1215
Hsp92I	GRCGYC	3 cut(s)	396, 566, 882
Hsp92II	CATG	3 cut(s)	512, 1207, 1282
HspAI	GCGC	8 cut(s)	10, 160, 300, 482, 566, 721, 882, 998
KasI	GGCGCC	2 cut(s)	565, 881
Kpn2I	TCCGGA	1 cut(s)	1195
Ksp22I	TGATCA	3 cut(s)	594, 1171, 1326
Kzo9I	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
LmnI	GCTCC	2 cut(s)	299, 467
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	3 cut(s)	344, 1039, 1450
MabI	ACCWGGT	1 cut(s)	636
MaeI	CTAG	3 cut(s)	1227, 1473, 1577
MaeII	ACGT	1 cut(s)	1215
MaeIII	GTNAC	5 cut(s)	115, 682, 784, 892, 1445
MalI	GATC	5 cut(s)	128, 596, 1173, 1328, 1527
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
MboII	GAAGA	6 cut(s)	205, 361, 988, 1078, 1090, 1093
MflI	RGATCY	1 cut(s)	1525
MhlI	GDGCHC	6 cut(s)	189, 645, 675, 995, 1115, 1443
MluCI	AATT	7 cut(s)	253, 446, 952, 1084, 1163, 1303, 1365
Mly113I	GGCGCC	2 cut(s)	566, 882
MlyI	GAGTC	1 cut(s)	1442
MmeI	TCCRAC	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	1195
MroXI	GAANNNNTTC	1 cut(s)	1572
MseI	TTAA	3 cut(s)	846, 951, 1509
MspI	CCGG	5 cut(s)	13, 240, 1094, 1196, 1260
MspR9I	CCNGG	5 cut(s)	240, 638, 1159, 1261, 1522
Mva1269I	GAATGC	3 cut(s)	419, 484, 1603
MvaI	CCWGG	3 cut(s)	638, 1159, 1522
MvnI	CGCG	4 cut(s)	183, 300, 718, 723
MwoI	GCNNNNNNNGC	5 cut(s)	291, 393, 459, 829, 1469
NarI	GGCGCC	2 cut(s)	566, 882
NciI	CCSGG	2 cut(s)	240, 1261
NdeII	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
NlaIII	CATG	3 cut(s)	512, 1207, 1282
NlaIV	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
NmeAIII	GCCGAG	1 cut(s)	974
NmuCI	GTSAC	4 cut(s)	115, 682, 784, 1445
NspV	TTCGAA	1 cut(s)	1389
PagI	TCATGA	2 cut(s)	508, 1203
PcsI	WCGNNNNNNNCGW	1 cut(s)	1386
PctI	GAATGC	3 cut(s)	419, 484, 1603
PdmI	GAANNNNTTC	1 cut(s)	1572
PfeI	GAWTC	4 cut(s)	243, 505, 1335, 1517
PkrI	GCNGC	4 cut(s)	284, 359, 486, 720
PleI	GAGTC	1 cut(s)	1442
PluTI	GGCGCC	2 cut(s)	569, 885
PpsI	GAGTC	1 cut(s)	1442
PpuMI	RGGWCCY	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	995
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	3 cut(s)	636, 1157, 1520
PspGI	CCWGG	3 cut(s)	636, 1157, 1520
PspN4I	GGNNCC	5 cut(s)	17, 140, 567, 736, 883
PspPI	GGNCC	2 cut(s)	138, 364
PspPPI	RGGWCCY	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	1525
RsaI	GTAC	3 cut(s)	456, 1059, 1090
RsaNI	GTAC	3 cut(s)	455, 1058, 1089
SacI	GAGCTC	1 cut(s)	995
SaqAI	TTAA	3 cut(s)	846, 951, 1509
SatI	GCNGC	4 cut(s)	283, 358, 485, 719
Sau3AI	GATC	5 cut(s)	126, 594, 1171, 1326, 1525
Sau96I	GGNCC	2 cut(s)	138, 364
SchI	GAGTC	1 cut(s)	1442
ScrFI	CCNGG	5 cut(s)	240, 638, 1159, 1261, 1522
SduI	GDGCHC	6 cut(s)	189, 645, 675, 995, 1115, 1443
SexAI	ACCWGGT	1 cut(s)	636
SfaNI	GCATC	3 cut(s)	344, 1039, 1450
SfcI	CTRYAG	1 cut(s)	544
SfoI	GGCGCC	2 cut(s)	567, 883
SfuI	TTCGAA	1 cut(s)	1389
SinI	GGWCC	1 cut(s)	364
Sse9I	AATT	7 cut(s)	253, 446, 952, 1084, 1163, 1303, 1365
SspDI	GGCGCC	2 cut(s)	565, 881
SspMI	CTAG	3 cut(s)	1227, 1473, 1577
SstI	GAGCTC	1 cut(s)	995
StyD4I	CCNGG	5 cut(s)	238, 636, 1157, 1259, 1520
TaaI	ACNGT	5 cut(s)	115, 545, 606, 1062, 1514
TaiI	ACGT	1 cut(s)	1218
TaqI	TCGA	5 cut(s)	93, 195, 315, 645, 1389
TasI	AATT	7 cut(s)	253, 446, 952, 1084, 1163, 1303, 1365
TatI	WGTACW	2 cut(s)	1057, 1088
TauI	GCSGC	3 cut(s)	285, 360, 721
TfiI	GAWTC	4 cut(s)	243, 505, 1335, 1517
Tru1I	TTAA	3 cut(s)	846, 951, 1509
Tru9I	TTAA	3 cut(s)	846, 951, 1509
TscAI	CASTG	2 cut(s)	609, 1519
TseFI	GTSAC	4 cut(s)	115, 682, 784, 1445
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	4 cut(s)	115, 682, 784, 1445
TspDTI	ATGAA	2 cut(s)	361, 663
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	609, 1519
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	2 cut(s)	446, 1303
XbaI	TCTAGA	2 cut(s)	1226, 1576
XmiI	GTMKAC	1 cut(s)	1415
XmnI	GAANNNNTTC	1 cut(s)	1572
XspI	CTAG	3 cut(s)	1227, 1473, 1577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.