Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

32052525 .. 32055875

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATTGGTTCACTCGTGAAATGCCTGCGATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCAATTTGGGTGGTTATGTGTCGCGGCACGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGATAGAGGGTGGTTTCCTGATGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGGCGCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAGAAGAAGTCGGGCGAAGCGGTTAATTTGCTTGATGATATGGTAGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACACCGGATAATGCAGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAATGTGGGAAGCCAGGAAATTGTTTGATCAGATTGAGATGAGTGAGCCTCCGGATGTCATGACTGACAATGTGCTTATTTCTGGAATGTGTGAAGTGGGGAGTTGTGTGAGGCTGGGAGGTTGTAGGATGACATGGTGGAGAAAGGATGAGGGAATTAGGATTTTGGATGAGATGTTCGAAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATCGAGGGGCTCTGTGACTCAGGAGAGGAAGCTGAAATCACTAGAGTAATATCTATGGCAATGTCAAGTGGAGACATTGACAGTGATTCCTGGGATCTTTTCCTTACTAAGGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAAACAGAATACTACTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

289

Amino Acids

32.41

Weight (kDa)

4.56

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	52 - 85	8.4e-08	PPR repeat family
PPR_1	PF12854	68 - 100	1.1e-06	PPR repeat
PPR_2	PF13041	72 - 108	2.2e-07	PPR repeat family
PPR	PF01535	74 - 103	1e-06	PPR repeat
PPR_1	PF12854	137 - 169	5.4e-06	PPR repeat
PPR_2	PF13041	148 - 188	2.1e-06	PPR repeat family
PPR_2	PF13041	207 - 237	1.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	104, 209
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	523
AciI	CCGC	2 cut(s)	88, 275
AclWI	GGATC	1 cut(s)	795
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	32, 802
AgsI	TTSAA	2 cut(s)	242, 406
AjnI	CCWGG	2 cut(s)	485, 782
AloI	GAACNNNNNNTCC	2 cut(s)	632, 664
AluBI	AGCT	4 cut(s)	160, 245, 321, 725
AluI	AGCT	4 cut(s)	160, 245, 321, 725
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	1 cut(s)	795
Aor13HI	TCCGGA	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	834
AspLEI	GCGC	2 cut(s)	212, 328
AsuHPI	GGTGA	4 cut(s)	64, 134, 352, 824
AsuII	TTCGAA	1 cut(s)	651
BaeGI	GKGCMC	2 cut(s)	45, 443
BanI	GGYRCC	2 cut(s)	104, 209
BanII	GRGCYC	2 cut(s)	323, 705
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	323
BccI	CCATC	3 cut(s)	25, 146, 184
BciT130I	CCWGG	2 cut(s)	487, 784
BciVI	GTATCC	1 cut(s)	814
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	1 cut(s)	735
BfoI	RGCGCY	2 cut(s)	213, 329
BfuI	GTATCC	1 cut(s)	814
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	2 cut(s)	487, 784
BmiI	GGNNCC	2 cut(s)	106, 211
BmrFI	CCNGG	2 cut(s)	487, 784
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
Bpu14I	TTCGAA	1 cut(s)	651
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	783
BsaWI	WCCGGW	2 cut(s)	421, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 802
Bse1I	ACTGG	3 cut(s)	458, 829, 858
Bse3DI	GCAATG	1 cut(s)	759
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	487, 784
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	6 cut(s)	190, 382, 532, 606, 625, 646
BseLI	CCNNNNNNNGG	2 cut(s)	32, 802
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	1 cut(s)	726
BseNI	ACTGG	3 cut(s)	458, 829, 858
BseSI	GKGCMC	2 cut(s)	45, 443
BseYI	CCCAGC	1 cut(s)	586
Bsh1236I	CGCG	1 cut(s)	88
BshNI	GGYRCC	2 cut(s)	104, 209
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	422, 524
BslI	CCNNNNNNNGG	2 cut(s)	32, 802
BsmAI	GTCTC	1 cut(s)	759
BsmI	GAATGC	1 cut(s)	865
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	4 cut(s)	45, 323, 443, 705
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	499, 693, 787
BspACI	CCGC	2 cut(s)	88, 275
BspCNI	CTCAG	1 cut(s)	725
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	2 cut(s)	106, 211
BspPI	GGATC	1 cut(s)	795
BspT104I	TTCGAA	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	104, 209
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	3 cut(s)	458, 829, 858
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	3 cut(s)	499, 693, 787
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	487, 784
Bst4CI	ACNGT	2 cut(s)	390, 776
Bst6I	CTCTTC	2 cut(s)	299, 389
BstACI	GRCGYC	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	27, 443
BstDEI	CTNAG	2 cut(s)	712, 801
BstENI	CCTNNNNNAGG	1 cut(s)	800
BstF5I	GGATG	6 cut(s)	190, 382, 532, 606, 625, 646
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	2 cut(s)	213, 329
BstHHI	GCGC	2 cut(s)	212, 328
BstKTI	GATC	3 cut(s)	502, 696, 790
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	3 cut(s)	499, 693, 787
BstNI	CCWGG	2 cut(s)	487, 784
BstSCI	CCNGG	2 cut(s)	485, 782
BstSLI	GKGCMC	2 cut(s)	45, 443
BstUI	CGCG	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuI	GTATCC	1 cut(s)	814
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	6 cut(s)	190, 382, 532, 606, 625, 646
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	2 cut(s)	27, 443
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	2 cut(s)	212, 328
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	2 cut(s)	532, 606
DdeI	CTNAG	2 cut(s)	712, 801
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	3 cut(s)	501, 695, 789
DpnII	GATC	3 cut(s)	499, 693, 787
Eam1104I	CTCTTC	2 cut(s)	299, 389
EarI	CTCTTC	2 cut(s)	299, 389
Ecl136II	GAGCTC	1 cut(s)	321
Eco24I	GRGCYC	2 cut(s)	323, 705
Eco53kI	GAGCTC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	321
EcoNI	CCTNNNNNAGG	1 cut(s)	800
EcoRII	CCWGG	2 cut(s)	485, 782
EcoT38I	GRGCYC	2 cut(s)	323, 705
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
FaeI	CATG	2 cut(s)	535, 609
FatI	CATG	2 cut(s)	531, 605
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	6 cut(s)	197, 389, 539, 613, 632, 653
FriOI	GRGCYC	2 cut(s)	323, 705
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	2 cut(s)	211, 327
GluI	GCNGC	1 cut(s)	89
GsaI	CCCAGC	1 cut(s)	590
HaeII	RGCGCY	2 cut(s)	213, 329
HapII	CCGG	2 cut(s)	422, 524
HhaI	GCGC	2 cut(s)	212, 328
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	535, 609
Hin6I	GCGC	2 cut(s)	210, 326
HinP1I	GCGC	2 cut(s)	210, 326
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	2 cut(s)	710, 779
HpaII	CCGG	2 cut(s)	422, 524
HphI	GGTGA	4 cut(s)	64, 134, 352, 824
Hpy166II	GTNNAC	3 cut(s)	12, 386, 678
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	6 cut(s)	17, 149, 524, 532, 555, 714
Hpy8I	GTNNAC	3 cut(s)	12, 386, 678
HpyAV	CCTTC	3 cut(s)	356, 361, 460
HpyCH4III	ACNGT	2 cut(s)	390, 776
HpyCH4V	TGCA	2 cut(s)	417, 431
HpyF3I	CTNAG	2 cut(s)	712, 801
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	535, 609
HspAI	GCGC	2 cut(s)	210, 326
KasI	GGCGCC	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	499, 693, 787
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	735
MaeIII	GTNAC	3 cut(s)	52, 220, 707
MalI	GATC	3 cut(s)	501, 695, 789
MboI	GATC	3 cut(s)	499, 693, 787
MboII	GAAGA	5 cut(s)	271, 316, 406, 418, 421
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	4 cut(s)	45, 323, 443, 705
MluCI	AATT	5 cut(s)	67, 280, 412, 491, 627
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	704
MroI	TCCGGA	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	2 cut(s)	174, 279
MspI	CCGG	2 cut(s)	422, 524
MspR9I	CCNGG	2 cut(s)	487, 784
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	2 cut(s)	487, 784
MvnI	CGCG	1 cut(s)	88
NarI	GGCGCC	1 cut(s)	210
NdeII	GATC	3 cut(s)	499, 693, 787
NlaIII	CATG	2 cut(s)	535, 609
NlaIV	GGNNCC	2 cut(s)	106, 211
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	2 cut(s)	52, 707
NspV	TTCGAA	1 cut(s)	651
PagI	TCATGA	1 cut(s)	531
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	779
PkrI	GCNGC	1 cut(s)	90
PleI	GAGTC	1 cut(s)	704
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	485, 782
PspFI	CCCAGC	1 cut(s)	586
PspGI	CCWGG	2 cut(s)	485, 782
PspN4I	GGNNCC	2 cut(s)	106, 211
PsuI	RGATCY	1 cut(s)	787
SacI	GAGCTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	174, 279
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	499, 693, 787
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	2 cut(s)	487, 784
SduI	GDGCHC	4 cut(s)	45, 323, 443, 705
SfaNI	GCATC	1 cut(s)	367
SfoI	GGCGCC	1 cut(s)	211
SfuI	TTCGAA	1 cut(s)	651
Sse9I	AATT	5 cut(s)	67, 280, 412, 491, 627
SsiI	CCGC	2 cut(s)	88, 275
SspDI	GGCGCC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	735
SstI	GAGCTC	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	485, 782
TaaI	ACNGT	2 cut(s)	390, 776
TaqI	TCGA	2 cut(s)	651, 696
TasI	AATT	5 cut(s)	67, 280, 412, 491, 627
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	2 cut(s)	174, 279
Tru9I	TTAA	2 cut(s)	174, 279
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	2 cut(s)	52, 707
Tsp45I	GTSAC	2 cut(s)	52, 707
TspRI	CASTG	1 cut(s)	781
XagI	CCTNNNNNAGG	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.