Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

7910582 .. 7918993

Gene Structure 8412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1081300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATCGACCCCCTCCTCTCCGACCTCAAAAACTCACAAATCCAATGCTCTGAAGACATTTTCATCACCCTAATTCGCAATTTTGGCGTCTTGGGTCGCCCCAAACTCGCCTTCAAAGCCTTTCTCGACGTGCTAAATTTTGGAGTTCAACGTTCTGCGAAGGCCCTGAATGCATTGTTGAACTATCTGGTTCAGAACAATGAGTTTAGTTTTGTTCACTCTGTGTTAAAAAATTGTGGGCAGAGATTTGAGGTTAGGCCCAATTTGTCCACTTGTAATATACTGATCAAAGCGCTCTGCAAAAAGAATGATGTGGAGACTGCACTTAAGGTGCTCGACGAAATGCCTGCGATGGGGTTTGTCCCGAATATGGTGACTTATACCACGATTATCGGCTGGTATGTTTCGCGGGGTTTGATGGATGGGTTTGTTAAGCAAGGGAAGTTGGTTGATGCCGTTAAGGTCATGGATGATATGGAGGAAAATAAGGTTGGAGCAAATGAGGTTACTTATGGGGTAATGGTTGAAGCTTACTGTAAGGATAAGAAGTCGTGTGAAGCGGTTATTTTGCTCAGTGATATGATTGCGAAAGGGTATATACCAAGCTTGGCGCTTTGCTGTAAGTGGGGGAGTTATGTGAGGAAAGGGAGGTTGTGGAATGACATGGTGGAGAAAGGGTGTGCTCCGAATTCTTTTACGTATAGTATGTTGATCAAAGGATTTTGTAAGATTGGAAAACCAGATGAGGGTATTAAGATTTTAGAAGAGATGATGGATAAAGGCTGCTTGCCTAACAAGTCTACATATAATATGTTGATTGAGGGGCTCTGTGACTTAGGAGCAGAAGCTGAAGTCACAGAAGTTGTTTCAATGGAAATGTCAAGTGGAGGCACAAACATTGCTTCTTGGGATCTTTACGTTACTAGGTTTGTTAGCGATCTGGATACTAGGGAAAGTCTTATGGACAAGATGCTAGTGGAGAACGTTCAACATATACTCTCATTGGAGGAGGAGGAGCCTAAACATTGTAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

346

Amino Acids

38.63

Weight (kDa)

5.37

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	81 - 136	7.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	85 - 115	1.2e-08	PPR repeat
PPR_2	PF13041	87 - 133	1.2e-14	PPR repeat family
PPR	PF01535	90 - 120	8.1e-07	PPR repeat
PPR_2	PF13041	139 - 180	1.6e-09	PPR repeat family
PPR_2	PF13041	207 - 243	1.9e-10	PPR repeat family
PPR_3	PF13812	218 - 274	5.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	225 - 257	7.8e-12	PPR repeat
PPR	PF01535	232 - 262	2.5e-08	PPR repeat
PPR_2	PF13041	237 - 278	3.2e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	800
AccII	CGCG	1 cut(s)	409
AciI	CCGC	2 cut(s)	409, 560
AclI	AACGTT	2 cut(s)	151, 984
AclWI	GGATC	1 cut(s)	918
AcsI	RAATTY	2 cut(s)	136, 688
AcuI	CTGAAG	2 cut(s)	72, 870
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	223
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	353, 370, 746
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	6 cut(s)	115, 149, 181, 527, 870, 989
AjiI	CACGTC	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	4 cut(s)	95, 127, 474, 506
AluBI	AGCT	3 cut(s)	530, 606, 848
AluI	AGCT	3 cut(s)	530, 606, 848
Alw21I	GWGCWC	2 cut(s)	336, 685
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	918
AlwNI	CAGNNNCTG	1 cut(s)	848
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	2 cut(s)	162, 257
ApeKI	GCWGC	1 cut(s)	783
ApoI	RAATTY	2 cut(s)	136, 688
AspLEI	GCGC	2 cut(s)	295, 613
AspS9I	GGNCC	2 cut(s)	163, 258
AsuHPI	GGTGA	2 cut(s)	58, 385
BanII	GRGCYC	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	336, 685
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	4 cut(s)	346, 412, 416, 766
BceAI	ACGGC	1 cut(s)	440
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciVI	GTATCC	1 cut(s)	937
BclI	TGATCA	2 cut(s)	285, 711
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	3 cut(s)	924, 948, 974
BfoI	RGCGCY	2 cut(s)	296, 614
BfrI	CTTAAG	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	937
BisI	GCNGC	1 cut(s)	784
BlsI	GCNGC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	163, 258
BmiI	GGNNCC	1 cut(s)	1017
BmsI	GCATC	2 cut(s)	442, 960
BpiI	GAAGAC	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 370, 746
Bse3DI	GCAATG	1 cut(s)	897
BseGI	GGATG	2 cut(s)	427, 475
BseLI	CCNNNNNNNGG	3 cut(s)	353, 370, 746
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	1 cut(s)	586
BseRI	GAGGAG	4 cut(s)	5, 1022, 1025, 1028
BseXI	GCAGC	1 cut(s)	770
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	2 cut(s)	164, 259
BsiHKAI	GWGCWC	2 cut(s)	336, 685
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	353, 370, 746
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	164, 259
Bsp1286I	GDGCHC	3 cut(s)	336, 685, 828
Bsp143I	GATC	5 cut(s)	3, 285, 711, 910, 937
BspACI	CCGC	2 cut(s)	409, 560
BspANI	GGCC	2 cut(s)	164, 259
BspCNI	CTCAG	1 cut(s)	585
BspFNI	CGCG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	1017
BspPI	GGATC	1 cut(s)	918
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	897
BssMI	GATC	5 cut(s)	3, 285, 711, 910, 937
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	759
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	348, 788
BstDEI	CTNAG	2 cut(s)	572, 835
BstF5I	GGATG	2 cut(s)	427, 475
BstFNI	CGCG	1 cut(s)	409
BstH2I	RGCGCY	2 cut(s)	296, 614
BstHHI	GCGC	2 cut(s)	295, 613
BstKTI	GATC	5 cut(s)	6, 288, 714, 913, 940
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	5 cut(s)	3, 285, 711, 910, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 116, 170
BstSNI	TACGTA	1 cut(s)	699
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	770
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	910
BsuI	GTATCC	1 cut(s)	937
BsuRI	GGCC	2 cut(s)	164, 259
BtgZI	GCGATG	1 cut(s)	365
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	427, 475
BtsIMutI	CAGTG	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	348, 788
CaiI	CAGNNNCTG	1 cut(s)	848
CfoI	GCGC	2 cut(s)	295, 613
Cfr13I	GGNCC	2 cut(s)	163, 258
CseI	GACGC	1 cut(s)	76
CviAII	CATG	2 cut(s)	466, 664
DdeI	CTNAG	2 cut(s)	572, 835
DpnI	GATC	5 cut(s)	5, 287, 713, 912, 939
DpnII	GATC	5 cut(s)	3, 285, 711, 910, 937
DraIII	CACNNNGTG	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco105I	TACGTA	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	828
Eco47III	AGCGCT	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	72, 870
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	688
EcoT22I	ATGCAT	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	828
FaeI	CATG	2 cut(s)	469, 667
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	465, 663
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	2 cut(s)	285, 711
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	1 cut(s)	784
FokI	GGATG	2 cut(s)	434, 482
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	1 cut(s)	784
FspBI	CTAG	3 cut(s)	924, 948, 974
GlaI	GCGC	2 cut(s)	294, 612
GluI	GCNGC	1 cut(s)	784
HaeII	RGCGCY	2 cut(s)	296, 614
HaeIII	GGCC	2 cut(s)	164, 259
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	295, 613
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	469, 667
Hin6I	GCGC	2 cut(s)	293, 611
HinP1I	GCGC	2 cut(s)	293, 611
HindIII	AAGCTT	2 cut(s)	528, 604
HphI	GGTGA	2 cut(s)	58, 385
Hpy166II	GTNNAC	3 cut(s)	217, 270, 801
Hpy188I	TCNGA	4 cut(s)	22, 52, 195, 687
Hpy188III	TCNNGA	3 cut(s)	125, 364, 941
Hpy8I	GTNNAC	3 cut(s)	217, 270, 801
Hpy99I	CGWCG	2 cut(s)	131, 341
HpyAV	CCTTC	2 cut(s)	121, 154
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	5 cut(s)	129, 151, 698, 918, 984
HpyCH4V	TGCA	3 cut(s)	173, 300, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 116, 170
HpyF3I	CTNAG	2 cut(s)	572, 835
HpySE526I	ACGT	5 cut(s)	129, 151, 698, 918, 984
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	469, 667
HspAI	GCGC	2 cut(s)	293, 611
Ksp22I	TGATCA	2 cut(s)	285, 711
Kzo9I	GATC	5 cut(s)	3, 285, 711, 910, 937
LmnI	GCTCC	4 cut(s)	494, 688, 839, 1015
LpnPI	CCDG	6 cut(s)	173, 179, 360, 382, 753, 926
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	2 cut(s)	442, 960
MaeI	CTAG	3 cut(s)	924, 948, 974
MaeII	ACGT	5 cut(s)	129, 151, 698, 918, 984
MaeIII	GTNAC	5 cut(s)	373, 505, 830, 853, 919
MalI	GATC	5 cut(s)	5, 287, 713, 912, 939
MboI	GATC	5 cut(s)	3, 285, 711, 910, 937
MboII	GAAGA	2 cut(s)	65, 776
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	3 cut(s)	336, 685, 828
MluCI	AATT	6 cut(s)	72, 79, 136, 232, 262, 688
MmeI	TCCRAC	2 cut(s)	45, 472
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	5 cut(s)	227, 327, 432, 459, 753
MspCI	CTTAAG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	84, 116, 170
NdeII	GATC	5 cut(s)	3, 285, 711, 910, 937
NlaIII	CATG	2 cut(s)	469, 667
NlaIV	GGNNCC	1 cut(s)	1017
NmuCI	GTSAC	3 cut(s)	373, 830, 853
NsiI	ATGCAT	1 cut(s)	175
PctI	GAATGC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	785
Ppu21I	YACGTR	1 cut(s)	699
Psp1406I	AACGTT	2 cut(s)	151, 984
PspN4I	GGNNCC	1 cut(s)	1017
PspPI	GGNCC	2 cut(s)	163, 258
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	910
SaqAI	TTAA	5 cut(s)	227, 327, 432, 459, 753
SatI	GCNGC	1 cut(s)	784
Sau3AI	GATC	5 cut(s)	3, 285, 711, 910, 937
Sau96I	GGNCC	2 cut(s)	163, 258
SduI	GDGCHC	3 cut(s)	336, 685, 828
SfaNI	GCATC	2 cut(s)	442, 960
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	699
Sse9I	AATT	6 cut(s)	72, 79, 136, 232, 262, 688
SsiI	CCGC	2 cut(s)	409, 560
SspMI	CTAG	3 cut(s)	924, 948, 974
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	5 cut(s)	132, 154, 701, 921, 987
TaqI	TCGA	3 cut(s)	6, 126, 336
TasI	AATT	6 cut(s)	72, 79, 136, 232, 262, 688
Tru1I	TTAA	5 cut(s)	227, 327, 432, 459, 753
Tru9I	TTAA	5 cut(s)	227, 327, 432, 459, 753
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	3 cut(s)	373, 830, 853
TseI	GCWGC	1 cut(s)	783
Tsp45I	GTSAC	3 cut(s)	373, 830, 853
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	580
Vha464I	CTTAAG	1 cut(s)	326
XapI	RAATTY	2 cut(s)	136, 688
XmiI	GTMKAC	1 cut(s)	800
XspI	CTAG	3 cut(s)	924, 948, 974
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.