Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

33939226 .. 33939828

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATGTGACTACTTATACTATATTAATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTCATGGATGAGATGGAGGATAATGGAGTTGGCGCCAATGGGGTTATGATTAAAGCTTATTGTAAGGAGAAGAAGTCGGGCGAAGCGGTTAATTTGCTTGATGATATGGTAGAGAAGAGGTATATACCAAGCTCGGCGCTCTGTTATAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACGCCAGATAATGCAGTACTGGGCACACTCATATACTGGCTTTGTAAGAAGGGAGAAGTATGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGACGAGTGAGCATCCGGATGTCATGACTTACAATGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTAAGGCAGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGTTCCCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

200

Amino Acids

22.59

Weight (kDa)

5.12

Isoelectric Point (pI)

17.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	15 - 47	1.4e-09	PPR repeat
PPR_2	PF13041	18 - 54	5.1e-10	PPR repeat family
PPR	PF01535	22 - 51	7.7e-09	PPR repeat
PPR_1	PF12854	115 - 146	2.4e-06	PPR repeat
PPR_1	PF12854	152 - 182	4.2e-08	PPR repeat
PPR_2	PF13041	153 - 200	6.5e-19	PPR repeat family
PPR_3	PF13812	153 - 198	5.5e-09	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccB1I	GGYRCC	2 cut(s)	8, 155
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	565
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	3 cut(s)	106, 179, 255
AluI	AGCT	3 cut(s)	106, 179, 255
Alw26I	GTCTC	1 cut(s)	437
Aor13HI	TCCGGA	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	565
AseI	ATTAAT	1 cut(s)	77
AspLEI	GCGC	2 cut(s)	158, 262
AsuHPI	GGTGA	2 cut(s)	38, 286
BaeGI	GKGCMC	1 cut(s)	377
BanI	GGYRCC	2 cut(s)	8, 155
BccI	CCATC	2 cut(s)	77, 130
BciT130I	CCWGG	1 cut(s)	421
BclI	TGATCA	2 cut(s)	433, 588
BcoDI	GTCTC	1 cut(s)	437
BfoI	RGCGCY	2 cut(s)	159, 263
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	10, 157
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	301, 463
BmuI	ACTGGG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bse1I	ACTGG	2 cut(s)	375, 392
BseAI	TCCGGA	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	421
BseGI	GGATG	7 cut(s)	88, 136, 316, 454, 466, 541, 560
BseNI	ACTGG	2 cut(s)	375, 392
BseSI	GKGCMC	1 cut(s)	377
BshNI	GGYRCC	2 cut(s)	8, 155
BsiSI	CCGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	437
BsmBI	CGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp13I	TCCGGA	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	433, 588
BspACI	CCGC	1 cut(s)	209
BspEI	TCCGGA	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	10, 157
BspT107I	GGYRCC	2 cut(s)	8, 155
BsrI	ACTGG	2 cut(s)	375, 392
BssMI	GATC	2 cut(s)	433, 588
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	2 cut(s)	233, 323
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	353
BstF5I	GGATG	7 cut(s)	88, 136, 316, 454, 466, 541, 560
BstH2I	RGCGCY	2 cut(s)	159, 263
BstHHI	GCGC	2 cut(s)	158, 262
BstKTI	GATC	2 cut(s)	436, 591
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	433, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	377
BtsCI	GGATG	7 cut(s)	88, 136, 316, 454, 466, 541, 560
Cac8I	GCNNGC	1 cut(s)	353
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	2 cut(s)	158, 262
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	3 cut(s)	127, 466, 541
CviJI	RGCY	7 cut(s)	106, 116, 179, 255, 334, 391, 419
CviKI_1	RGCY	7 cut(s)	106, 116, 179, 255, 334, 391, 419
CviQI	GTAC	1 cut(s)	368
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	2 cut(s)	435, 590
DpnII	GATC	2 cut(s)	433, 588
Eam1104I	CTCTTC	2 cut(s)	233, 323
EarI	CTCTTC	2 cut(s)	233, 323
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	419
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	3 cut(s)	130, 469, 544
FatI	CATG	3 cut(s)	126, 465, 540
FbaI	TGATCA	2 cut(s)	433, 588
FokI	GGATG	7 cut(s)	95, 143, 323, 441, 473, 548, 567
GlaI	GCGC	2 cut(s)	157, 261
HaeII	RGCGCY	2 cut(s)	159, 263
HapII	CCGG	1 cut(s)	458
HhaI	GCGC	2 cut(s)	158, 262
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	130, 469, 544
Hin6I	GCGC	2 cut(s)	156, 260
HinP1I	GCGC	2 cut(s)	156, 260
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	1 cut(s)	597
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	2 cut(s)	38, 286
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	1 cut(s)	602
Hpy188III	TCNNGA	4 cut(s)	53, 458, 466, 489
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	3 cut(s)	290, 295, 394
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	351, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	130, 469, 544
HspAI	GCGC	2 cut(s)	156, 260
KasI	GGCGCC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	457
Ksp22I	TGATCA	2 cut(s)	433, 588
Kzo9I	GATC	2 cut(s)	433, 588
LweI	GCATC	2 cut(s)	301, 463
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	435, 590
MboI	GATC	2 cut(s)	433, 588
MboII	GAAGA	5 cut(s)	205, 250, 340, 352, 355
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	4 cut(s)	214, 346, 425, 565
Mly113I	GGCGCC	1 cut(s)	156
MnlI	CCTC	8 cut(s)	9, 35, 106, 133, 234, 301, 324, 519
MroI	TCCGGA	1 cut(s)	457
MseI	TTAA	4 cut(s)	77, 120, 174, 213
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	103
NarI	GGCGCC	1 cut(s)	156
NdeII	GATC	2 cut(s)	433, 588
NlaIII	CATG	3 cut(s)	130, 469, 544
NlaIV	GGNNCC	2 cut(s)	10, 157
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	58
PagI	TCATGA	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	597
PluTI	GGCGCC	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	10, 157
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	77, 120, 174, 213
Sau3AI	GATC	2 cut(s)	433, 588
ScaI	AGTACT	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	8 cut(s)	108, 126, 181, 245, 257, 276, 306, 530
SfaNI	GCATC	2 cut(s)	301, 463
SfoI	GGCGCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	4 cut(s)	214, 346, 425, 565
SsiI	CCGC	1 cut(s)	209
SspDI	GGCGCC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	324
TasI	AATT	4 cut(s)	214, 346, 425, 565
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	597
Tru1I	TTAA	4 cut(s)	77, 120, 174, 213
Tru9I	TTAA	4 cut(s)	77, 120, 174, 213
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	1 cut(s)	565
ZrmI	AGTACT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.