Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

24128309 .. 24128653

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGATCCCAGGCCATACATGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATATTTTTCAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCAGGAGACGAAGCTGAAATCACTACAGTAATATCTATGGCAATGTCAAGTGGACACATTGACAGTGATTCCTGGGAGCTTTTCCTTACAAAGGTTATTGGTGATTTGGATTCTGGGGAAAGTATTCTAAACAGAATACTGCTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

6.83

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	2 cut(s)	54, 67
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	129
AjnI	CCWGG	2 cut(s)	63, 257
AluBI	AGCT	2 cut(s)	200, 265
AluI	AGCT	2 cut(s)	200, 265
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	54, 67
AoxI	GGCC	2 cut(s)	10, 66
Asp700I	GAANNNNTTC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	180
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	65, 259
BcoDI	GTCTC	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	65, 259
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	65, 259
BsaJI	CCNNGG	2 cut(s)	63, 258
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	65, 259
BseDI	CCNNGG	2 cut(s)	63, 258
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	12, 68
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	12, 68
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	12, 68
BspCNI	CTCAG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	54, 67
BsrDI	GCAATG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	63, 258
BssMI	GATC	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	65, 259
Bst4CI	ACNGT	2 cut(s)	214, 251
BstDEI	CTNAG	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	65, 259
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	63, 257
BstSFI	CTRYAG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	12, 68
BtsIMutI	CAGTG	1 cut(s)	256
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	6 cut(s)	12, 68, 135, 178, 200, 265
CviKI_1	RGCY	6 cut(s)	12, 68, 135, 178, 200, 265
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	63, 257
EcoT38I	GRGCYC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	1 cut(s)	77
FaiI	YATR	5 cut(s)	71, 75, 159, 164, 224
FatI	CATG	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	12, 68
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	3 cut(s)	185, 254, 296
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	153, 239
Hpy188III	TCNNGA	1 cut(s)	189
Hpy8I	GTNNAC	2 cut(s)	153, 239
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	2 cut(s)	214, 251
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	19, 50, 77, 174, 244, 271, 285, 314
MaeIII	GTNAC	2 cut(s)	17, 182
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	4 cut(s)	37, 40, 43, 46
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	2 cut(s)	90, 166
MroXI	GAANNNNTTC	1 cut(s)	309
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	65, 259
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	65, 259
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	17, 182
NspI	RCATGY	1 cut(s)	77
PciI	ACATGT	1 cut(s)	73
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	254, 296
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	63, 257
PspGI	CCWGG	2 cut(s)	63, 257
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	65, 259
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	3 cut(s)	202, 267, 282
SfcI	CTRYAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	63, 257
TaaI	ACNGT	2 cut(s)	214, 251
TasI	AATT	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	254, 296
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	17, 182
Tsp45I	GTSAC	2 cut(s)	17, 182
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	275
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.