Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

32038981 .. 32047784

Gene Structure 8804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56731

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCTGCGATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCAATTTGGGTGGTTATGTGTCGCGGCACGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGATAGAGGGTGGTTTCCTGATGTGAGTACATATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGACGCCAATGAGGTCACTTATGGGGTTATGATTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTATTGTAAGGAGATTGATGTTTTGTGCTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACACCGGATAATGCAGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAATGTGGGAAGCCAGGAAATTGTTTGATCAGATTGAGATGAGTGAGCCTCCTGATGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGGGTGAGGCTGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGTTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATGTTCGAAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATCGAGGGGCTCTGTGACTCAGGAGAGGAAGCTGAAATCACTAGAGTATTATCTATGGCAATGTCAAGTGGAGACATTGACAGTGATTCCTGGGATCTTTTCCTTACTAAGGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAAACAGAATACTACTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

302

Amino Acids

33.72

Weight (kDa)

4.49

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 57	2.8e-11	PPR repeat family
PPR_3	PF13812	32 - 88	2.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	40 - 72	1.9e-09	PPR repeat
PPR_2	PF13041	43 - 90	9.8e-16	PPR repeat family
PPR	PF01535	46 - 76	1.2e-08	PPR repeat
PPR_1	PF12854	128 - 160	5.7e-06	PPR repeat
PPR_2	PF13041	166 - 215	2.4e-21	PPR repeat family
PPR_1	PF12854	166 - 195	6.4e-09	PPR repeat
PPR_3	PF13812	166 - 213	9.2e-09	Pentatricopeptide repeat domain
PPR	PF01535	170 - 199	1.2e-06	PPR repeat
PPR_1	PF12854	197 - 229	6.7e-12	PPR repeat
PPR_2	PF13041	204 - 250	6e-15	PPR repeat family
PPR	PF01535	204 - 234	3.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	1 cut(s)	67
AciI	CCGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	834
AcsI	RAATTY	1 cut(s)	604
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	11, 841
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	458, 821
AloI	GAACNNNNNNTCC	2 cut(s)	671, 703
AluBI	AGCT	3 cut(s)	181, 294, 764
AluI	AGCT	3 cut(s)	181, 294, 764
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	798
AlwI	GGATC	1 cut(s)	834
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	604
ArsI	GACNNNNNNTTYG	2 cut(s)	671, 703
Asp700I	GAANNNNTTC	1 cut(s)	873
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	4 cut(s)	43, 113, 566, 863
AsuII	TTCGAA	1 cut(s)	690
BaeGI	GKGCMC	2 cut(s)	24, 416
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	296, 744
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	4 cut(s)	4, 148, 152, 205
BciT130I	CCWGG	2 cut(s)	460, 823
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	2 cut(s)	472, 627
BcoDI	GTCTC	1 cut(s)	798
BfaI	CTAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	853
BisI	GCNGC	2 cut(s)	68, 331
BlsI	GCNGC	2 cut(s)	69, 332
Bme1390I	CCNGG	2 cut(s)	460, 823
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	460, 823
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	1 cut(s)	340
BmuI	ACTGGG	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
Bpu14I	TTCGAA	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	822
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 841
Bse1I	ACTGG	3 cut(s)	431, 868, 897
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	460, 823
BseDI	CCNNGG	1 cut(s)	822
BseGI	GGATG	5 cut(s)	163, 211, 355, 580, 599
BseLI	CCNNNNNNNGG	2 cut(s)	11, 841
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	3 cut(s)	431, 868, 897
BseSI	GKGCMC	2 cut(s)	24, 416
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	560
Bsh1236I	CGCG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	11, 841
BsmAI	GTCTC	1 cut(s)	798
BsmI	GAATGC	1 cut(s)	904
Bsp119I	TTCGAA	1 cut(s)	690
Bsp1286I	GDGCHC	4 cut(s)	24, 296, 416, 744
Bsp143I	GATC	4 cut(s)	472, 627, 732, 826
BspACI	CCGC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	764
BspFNI	CGCG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	834
BspT104I	TTCGAA	1 cut(s)	690
BspT107I	GGYRCC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	798
BsrI	ACTGG	3 cut(s)	431, 868, 897
BssECI	CCNNGG	1 cut(s)	822
BssMI	GATC	4 cut(s)	472, 627, 732, 826
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	460, 823
Bst4CI	ACNGT	2 cut(s)	363, 815
Bst6I	CTCTTC	2 cut(s)	272, 362
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	2 cut(s)	6, 416
BstDEI	CTNAG	2 cut(s)	751, 840
BstENI	CCTNNNNNAGG	1 cut(s)	839
BstF5I	GGATG	5 cut(s)	163, 211, 355, 580, 599
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	4 cut(s)	475, 630, 735, 829
BstMAI	GTCTC	1 cut(s)	798
BstMBI	GATC	4 cut(s)	472, 627, 732, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	2 cut(s)	460, 823
BstSCI	CCNGG	2 cut(s)	458, 821
BstSLI	GKGCMC	2 cut(s)	24, 416
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BsuI	GTATCC	1 cut(s)	853
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	5 cut(s)	163, 211, 355, 580, 599
BtsIMutI	CAGTG	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	6, 416
CciI	TCATGA	1 cut(s)	504
CfoI	GCGC	1 cut(s)	301
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	138
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	2 cut(s)	505, 580
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	751, 840
DpnI	GATC	4 cut(s)	474, 629, 734, 828
DpnII	GATC	4 cut(s)	472, 627, 732, 826
Eam1104I	CTCTTC	2 cut(s)	272, 362
EarI	CTCTTC	2 cut(s)	272, 362
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	296, 744
Eco53kI	GAGCTC	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	839
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	458, 821
EcoT38I	GRGCYC	2 cut(s)	296, 744
FaeI	CATG	2 cut(s)	508, 583
FatI	CATG	2 cut(s)	504, 579
FbaI	TGATCA	2 cut(s)	472, 627
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	2 cut(s)	68, 331
FokI	GGATG	5 cut(s)	170, 218, 362, 587, 606
FriOI	GRGCYC	2 cut(s)	296, 744
Fsp4HI	GCNGC	2 cut(s)	68, 331
FspBI	CTAG	1 cut(s)	774
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	2 cut(s)	68, 331
GsaI	CCCAGC	1 cut(s)	564
HaeII	RGCGCY	1 cut(s)	302
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	508, 583
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	636, 749, 818
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	4 cut(s)	43, 113, 566, 863
Hpy166II	GTNNAC	3 cut(s)	229, 359, 717
Hpy188I	TCNGA	2 cut(s)	477, 603
Hpy188III	TCNNGA	5 cut(s)	128, 497, 505, 528, 753
Hpy8I	GTNNAC	3 cut(s)	229, 359, 717
HpyAV	CCTTC	4 cut(s)	329, 334, 433, 652
HpyCH4III	ACNGT	2 cut(s)	363, 815
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	2 cut(s)	390, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	751, 840
HpySE526I	ACGT	1 cut(s)	516
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	508, 583
HspAI	GCGC	1 cut(s)	299
Ksp22I	TGATCA	2 cut(s)	472, 627
Kzo9I	GATC	4 cut(s)	472, 627, 732, 826
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	31, 241, 746
MalI	GATC	4 cut(s)	474, 629, 734, 828
MboI	GATC	4 cut(s)	472, 627, 732, 826
MboII	GAAGA	4 cut(s)	289, 379, 391, 394
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	4 cut(s)	24, 296, 416, 744
MluCI	AATT	5 cut(s)	46, 385, 464, 604, 666
MlyI	GAGTC	1 cut(s)	743
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	460, 823
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	2 cut(s)	460, 823
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	4 cut(s)	472, 627, 732, 826
NlaIII	CATG	2 cut(s)	508, 583
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	3 cut(s)	31, 241, 746
NspV	TTCGAA	1 cut(s)	690
PagI	TCATGA	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PctI	GAATGC	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	2 cut(s)	636, 818
PkrI	GCNGC	2 cut(s)	69, 332
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	458, 821
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	458, 821
PspN4I	GGNNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	826
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	68, 331
Sau3AI	GATC	4 cut(s)	472, 627, 732, 826
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	460, 823
SduI	GDGCHC	4 cut(s)	24, 296, 416, 744
SfaNI	GCATC	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	690
Sse9I	AATT	5 cut(s)	46, 385, 464, 604, 666
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	774
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	458, 821
TaaI	ACNGT	2 cut(s)	363, 815
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	2 cut(s)	690, 735
TasI	AATT	5 cut(s)	46, 385, 464, 604, 666
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	636, 818
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	3 cut(s)	31, 241, 746
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	3 cut(s)	31, 241, 746
TspRI	CASTG	1 cut(s)	820
XagI	CCTNNNNNAGG	1 cut(s)	839
XapI	RAATTY	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.