Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

36295645 .. 36295989

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACCGGAGGCCGATGTCACGGGAAGAAGAAGAAGATGATGGGTAGGGGTGCGGACGGATCCCAGGCCATACATGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATATTTTTCAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCAGGAGACGAAGCTGAAATCACTACAGTAATATCTATGGCAATGTCAAGTGGACACATTGACAGTGATTCCTGGGAGCTTTTCCTTACAAAGGTTATTGGTGATTTGGATTCTGGGGAAAGTATTCTAAACAGAATACTGCTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

6.83

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	2 cut(s)	54, 67
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	129
AjnI	CCWGG	2 cut(s)	63, 257
AluBI	AGCT	2 cut(s)	200, 265
AluI	AGCT	2 cut(s)	200, 265
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	54, 67
AoxI	GGCC	2 cut(s)	10, 66
Asp700I	GAANNNNTTC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	180
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	65, 259
BcoDI	GTCTC	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	210
Bme1390I	CCNGG	2 cut(s)	65, 259
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	65, 259
BsaJI	CCNNGG	2 cut(s)	63, 258
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	65, 259
BseDI	CCNNGG	2 cut(s)	63, 258
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	12, 68
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	186
BsmBI	CGTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	12, 68
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	12, 68
BspCNI	CTCAG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	54, 67
BsrDI	GCAATG	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	63, 258
BssMI	GATC	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	65, 259
Bst4CI	ACNGT	2 cut(s)	214, 251
BstDEI	CTNAG	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	65, 259
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	63, 257
BstSFI	CTRYAG	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	12, 68
BtsIMutI	CAGTG	1 cut(s)	256
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	6 cut(s)	12, 68, 135, 178, 200, 265
CviKI_1	RGCY	6 cut(s)	12, 68, 135, 178, 200, 265
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	63, 257
EcoT38I	GRGCYC	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	1 cut(s)	77
FaiI	YATR	5 cut(s)	71, 75, 159, 164, 224
FatI	CATG	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	12, 68
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	3 cut(s)	185, 254, 296
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	153, 239
Hpy188III	TCNNGA	1 cut(s)	189
Hpy8I	GTNNAC	2 cut(s)	153, 239
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	2 cut(s)	214, 251
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	19, 50, 77, 174, 244, 271, 285, 314
MaeIII	GTNAC	2 cut(s)	17, 182
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	4 cut(s)	37, 40, 43, 46
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	2 cut(s)	90, 166
MroXI	GAANNNNTTC	1 cut(s)	309
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	65, 259
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	65, 259
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	17, 182
NspI	RCATGY	1 cut(s)	77
PciI	ACATGT	1 cut(s)	73
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	254, 296
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PscI	ACATGT	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	63, 257
PspGI	CCWGG	2 cut(s)	63, 257
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	65, 259
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	3 cut(s)	202, 267, 282
SfcI	CTRYAG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	63, 257
TaaI	ACNGT	2 cut(s)	214, 251
TasI	AATT	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	254, 296
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	17, 182
Tsp45I	GTSAC	2 cut(s)	17, 182
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	256
XagI	CCTNNNNNAGG	1 cut(s)	275
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.