Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

8255556 .. 8258062

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTTCTCAGGGACCCAAGATGGGCACTGATGGTGGATATTGGAAGGGGTTTGCGAACAATGGAAGAGTCTCGAAACATGAATTTGCAGGCATCTTCAACAGCACTGAAGTCAGAATCTGAACAAAAGTATGTTACTGTAAGGGGAGGGGTGGGCGAAGCGGTTAATTTGCTTAATAATATGGTGGATAAGAGGCATGTGCCGATCTTGGCGCTCTGTTGTAAGGTGGTTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGCAAGCTGTGGAGGAGGCTTTTGAAGAAGAATCGCACACCGGATAATGCTGTTTTGGGGACACTGATATACTGGCTTTGTAAGAAGGGAGAGTTGTGGAAGGCCAGGAAATTGTTTGATCAGTTTGAGACGAGTGACCTCCGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

139

Amino Acids

15.86

Weight (kDa)

9.25

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	408
AciI	CCGC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	99, 292
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	75, 389
AlwNI	CAGNNNCTG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	408
AoxI	GGCC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	28
BccI	CCATC	2 cut(s)	15, 25
BciT130I	CCWGG	1 cut(s)	373
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	75, 389
BfoI	RGCGCY	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	14, 15
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	2 cut(s)	101, 253
BsaWI	WCCGGW	2 cut(s)	307, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	295
BseSI	GKGCMC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	308, 409
BslFI	GGGAC	2 cut(s)	26, 340
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	75, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	2 cut(s)	26, 340
BsnI	GGCC	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp13I	TCCGGA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	204, 385
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	21
BspEI	TCCGGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	14, 15
BsrI	ACTGG	1 cut(s)	344
BssMI	GATC	2 cut(s)	204, 385
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	90, 268, 272
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	207, 388
BstMAI	GTCTC	2 cut(s)	75, 389
BstMBI	GATC	2 cut(s)	204, 385
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	26, 104, 329
Cac8I	GCNNGC	3 cut(s)	90, 268, 272
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	13
CviAII	CATG	2 cut(s)	79, 197
CviJI	RGCY	4 cut(s)	274, 286, 343, 371
CviKI_1	RGCY	4 cut(s)	274, 286, 343, 371
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	206, 387
DpnII	GATC	2 cut(s)	204, 385
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	2 cut(s)	82, 200
FaiI	YATR	5 cut(s)	80, 132, 182, 198, 337
FaqI	GGGAC	2 cut(s)	26, 340
FatI	CATG	2 cut(s)	78, 196
FbaI	TGATCA	1 cut(s)	385
FokI	GGATG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	2 cut(s)	308, 409
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	82, 200
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	3 cut(s)	68, 116, 298
HpaII	CCGG	2 cut(s)	308, 409
Hpy188I	TCNGA	2 cut(s)	115, 121
Hpy188III	TCNNGA	2 cut(s)	72, 409
HpyAV	CCTTC	5 cut(s)	39, 242, 247, 346, 361
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	88, 270
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	82, 200
HspAI	GCGC	1 cut(s)	212
KflI	GGGWCCC	1 cut(s)	13
Kpn2I	TCCGGA	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	204, 385
LpnPI	CCDG	5 cut(s)	74, 321, 325, 358, 385
LweI	GCATC	2 cut(s)	101, 253
MaeIII	GTNAC	2 cut(s)	133, 401
MalI	GATC	2 cut(s)	206, 387
MboI	GATC	2 cut(s)	204, 385
MboII	GAAGA	4 cut(s)	77, 87, 304, 307
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	3 cut(s)	82, 166, 377
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	140, 186, 253, 273, 276, 416
MroI	TCCGGA	1 cut(s)	408
MseI	TTAA	2 cut(s)	165, 174
MspI	CCGG	2 cut(s)	308, 409
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
NdeII	GATC	2 cut(s)	204, 385
NlaIII	CATG	2 cut(s)	82, 200
NlaIV	GGNNCC	2 cut(s)	14, 15
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	116, 298
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	13
Psp5II	RGGWCCY	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	14, 15
PspPI	GGNCC	1 cut(s)	13
PspPPI	RGGWCCY	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	165, 174
Sau3AI	GATC	2 cut(s)	204, 385
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	4 cut(s)	228, 258, 276, 408
SfaNI	GCATC	2 cut(s)	101, 253
SinI	GGWCC	1 cut(s)	13
Sse9I	AATT	3 cut(s)	82, 166, 377
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	73
TasI	AATT	3 cut(s)	82, 166, 377
TfiI	GAWTC	2 cut(s)	116, 298
Tru1I	TTAA	2 cut(s)	165, 174
Tru9I	TTAA	2 cut(s)	165, 174
TscAI	CASTG	3 cut(s)	33, 111, 336
TseFI	GTSAC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	33, 111, 336
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.