Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

223638 .. 224375

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgcctgccatgggatttgtgcccaatgtggtgacttttactaccattttgggttccaagagagtgtctggtgagtttttggacagagggtggtttcctgatgtgactacttatactatattgatggatgggtatgtggagcaggggaagctggttgaggctattaaggtcatggatgagatggaggataatgggattggttccaatgaggttacttatggagttatgattgaaggttattgcaaggaacagaagtcgggcgaagcggttaatttgcttgatgatatggtggagaagaggtatataccgagctcggcgctctgttgtaaggtgattgatgttttgtgttgcgaagggaaggtggaggatgcttgtgaactgtggaagaggcttttgaggaggaattgcacaccggataatgctgtattgggcacgctcatatactggctttgtaagaagggagaagtatgcgaagccaggaaattgtttgatcagtttgagacgagtgagcctccggatgtcatgatttacatcgtgcttatttctgaaatgtgtgaagtggaggagttgtgtgaggcagggaggttgtgggatgacatggtggagaaaggatgttctccaaattcttttacatataatgtatctgtaagattggaaaagcgaaggagggaattaggattttggacgagatgtttgaaaaaggttgtttgccaaacaagtctacttatgcaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

245

Amino Acids

27.9

Weight (kDa)

4.79

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	721
AccIII	TCCGGA	1 cut(s)	514
AciI	CCGC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	622
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	233, 697
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	2 cut(s)	151, 312
AluI	AGCT	2 cut(s)	151, 312
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	494
Aor13HI	TCCGGA	1 cut(s)	514
ApoI	RAATTY	1 cut(s)	622
ArsI	GACNNNNNNTTYG	2 cut(s)	676, 708
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	3 cut(s)	43, 83, 343
BaeGI	GKGCMC	2 cut(s)	24, 434
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	314
BccI	CCATC	3 cut(s)	118, 122, 175
BciT130I	CCWGG	1 cut(s)	478
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	478
BmiI	GGNNCC	2 cut(s)	55, 202
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	358
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
BsaBI	GATNNNNATC	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	2 cut(s)	412, 514
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 554, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	1 cut(s)	737
Bse8I	GATNNNNATC	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	6 cut(s)	133, 181, 373, 523, 598, 617
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	1 cut(s)	737
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	2 cut(s)	412, 578
BseSI	GKGCMC	2 cut(s)	24, 434
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	413, 515
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	494
BsmBI	CGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	3 cut(s)	24, 314, 434
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	1 cut(s)	490
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	55, 202
BsrDI	GCAATG	1 cut(s)	737
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	2 cut(s)	290, 380
BstC8I	GCNNGC	2 cut(s)	6, 434
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	6 cut(s)	133, 181, 373, 523, 598, 617
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	476
BstSLI	GKGCMC	2 cut(s)	24, 434
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	6 cut(s)	133, 181, 373, 523, 598, 617
Cac8I	GCNNGC	2 cut(s)	6, 434
CciI	TCATGA	1 cut(s)	522
CfoI	GCGC	1 cut(s)	319
CviAII	CATG	4 cut(s)	10, 172, 523, 598
CviJI	RGCY	7 cut(s)	151, 161, 312, 391, 448, 476, 511
CviKI_1	RGCY	7 cut(s)	151, 161, 312, 391, 448, 476, 511
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	290, 380
EarI	CTCTTC	2 cut(s)	290, 380
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	4 cut(s)	13, 175, 526, 601
FatI	CATG	4 cut(s)	9, 171, 522, 597
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	721
FokI	GGATG	6 cut(s)	140, 188, 380, 530, 605, 624
FriOI	GRGCYC	1 cut(s)	314
GlaI	GCGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	320
HapII	CCGG	2 cut(s)	413, 515
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	4 cut(s)	13, 175, 526, 601
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	413, 515
HphI	GGTGA	3 cut(s)	43, 83, 343
Hpy166II	GTNNAC	2 cut(s)	377, 722
Hpy188I	TCNGA	1 cut(s)	547
Hpy188III	TCNNGA	3 cut(s)	98, 515, 523
Hpy8I	GTNNAC	2 cut(s)	377, 722
HpyAV	CCTTC	5 cut(s)	227, 347, 352, 451, 657
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	243, 408, 730
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
Hsp92II	CATG	4 cut(s)	13, 175, 526, 601
HspAI	GCGC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	1 cut(s)	139
LweI	GCATC	1 cut(s)	358
MaeIII	GTNAC	3 cut(s)	31, 103, 211
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	2 cut(s)	307, 397
MhlI	GDGCHC	3 cut(s)	24, 314, 434
MluCI	AATT	5 cut(s)	271, 403, 482, 622, 671
MroI	TCCGGA	1 cut(s)	514
MseI	TTAA	2 cut(s)	165, 270
MspI	CCGG	2 cut(s)	413, 515
MspR9I	CCNGG	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	148
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	4 cut(s)	13, 175, 526, 601
NlaIV	GGNNCC	2 cut(s)	55, 202
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	31, 103
PagI	TCATGA	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	55, 202
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	165, 270
Sau3AI	GATC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	3 cut(s)	24, 314, 434
SfaNI	GCATC	1 cut(s)	358
Sse9I	AATT	5 cut(s)	271, 403, 482, 622, 671
SsiI	CCGC	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	381
TasI	AATT	5 cut(s)	271, 403, 482, 622, 671
Tru1I	TTAA	2 cut(s)	165, 270
Tru9I	TTAA	2 cut(s)	165, 270
TseFI	GTSAC	2 cut(s)	31, 103
Tsp45I	GTSAC	2 cut(s)	31, 103
XapI	RAATTY	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.