Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

33565869 .. 33567481

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGCTGCTCCGCAGGAACCTCTCCCCCAAACCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCCCTTCTCCACCTCCACCTCCACCTCCGCCGCCGTCGATTTCCTCCACTCCTACACCGTCACCCCTCCGATCCAAGACTGGCCCCAACACCTCCACCCGAAGCGCCTCATCTCCCTCATCACCCGCGAGCCCAAACTCGACGTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGGATTCCACCATAATTACCACACCTACCACGCCATCATCCGCCGCCTCCTCCGCTCCCGCGCTTTTCACCTCATCGACCCCCTCCTCTCCGACCTCCGCACCTCCAATCTCCGATGCGGCGAGGACCTCTTCATCTCCCTAATCCGCAACTACGGCGTCGTTTCACGCCCCAAACTCGCATTCAAGACATTTATCACCATTCCGAAATTCGGCGTACAACGCTCCGTGAGGTCGTTGAATGCGCTGCTGAACGCTTTGGTTCAGAATCATGAGTATAGATTGGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGTTTCGGGGTGGCGCCGAATGTGTTTAGTTGTAATATATTGATCAAAGCACTGTGCAAGAGAAATGATTTGGAGACTGCACACCAGGTGCTCGATGAAATGCCTGCGATGGGATTTGTGCCCAATGTGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTGTCCTGATGTGACTACATATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGGCGCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGAAGTCGGGTGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGTACTGTGGAAGAGGCTTTTGAAGAAGAATTGTACACCGGATAATGCGGTGTTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAGTATGGGAAGCCAGGAAATTATTTGATCAGTTTGAGACGAGTGAGCCTCCGGATGTCATGACTTACAACGTGCTTATTTCTAGAATGTGTGATGTGGGGGAGTTGTGGGAGGCCGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGTTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATGTTCGAAAAAGGCTATTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCGGTAGAGGATGCTGAAATGGCTAGAGTAATATCTATGTCAATATCAAGTGGAGACATTAACAGTGATTCCTGGGATCTTTTCCTTACTAAAGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAGACAGATTACTACTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

517

Amino Acids

58.56

Weight (kDa)

6.33

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	189 - 220	2.8e-08	PPR repeat
PPR_2	PF13041	192 - 230	7.8e-10	PPR repeat family
PPR_3	PF13812	231 - 291	4.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	239 - 271	2.5e-09	PPR repeat
PPR_2	PF13041	242 - 291	2.3e-16	PPR repeat family
PPR	PF01535	246 - 275	2.8e-08	PPR repeat
PPR_1	PF12854	274 - 306	2.3e-06	PPR repeat
PPR_2	PF13041	278 - 314	4.9e-07	PPR repeat family
PPR	PF01535	280 - 309	2.2e-06	PPR repeat
PPR_1	PF12854	343 - 374	8.9e-06	PPR repeat
PPR_1	PF12854	381 - 410	4.4e-07	PPR repeat
PPR_2	PF13041	381 - 430	3.5e-19	PPR repeat family
PPR_3	PF13812	381 - 428	1.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	404 - 461	1.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	412 - 444	1.4e-11	PPR repeat
PPR_2	PF13041	419 - 465	1.5e-13	PPR repeat family
PPR	PF01535	419 - 448	2.8e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccB1I	GGYRCC	2 cut(s)	571, 827
AccBSI	CCGCTC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	1361
AccII	CGCG	2 cut(s)	189, 306
AccIII	TCCGGA	1 cut(s)	1141
AclWI	GGATC	2 cut(s)	127, 1479
AcsI	RAATTY	2 cut(s)	452, 1249
AcyI	GRCGYC	4 cut(s)	204, 402, 572, 828
AdeI	CACNNNGTG	2 cut(s)	538, 646
AfaI	GTAC	3 cut(s)	462, 1005, 1036
AfiI	CCNNNNNNNGG	3 cut(s)	455, 668, 687
AgsI	TTSAA	4 cut(s)	430, 484, 860, 1024
AjnI	CCWGG	3 cut(s)	642, 1103, 1466
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AloI	GAACNNNNNNTCC	2 cut(s)	1316, 1348
AluBI	AGCT	3 cut(s)	778, 863, 939
AluI	AGCT	3 cut(s)	778, 863, 939
Alw21I	GWGCWC	2 cut(s)	651, 941
Alw26I	GTCTC	3 cut(s)	626, 1121, 1443
AlwI	GGATC	2 cut(s)	127, 1479
Aor13HI	TCCGGA	1 cut(s)	1141
AoxI	GGCC	2 cut(s)	143, 1203
ApeKI	GCWGC	2 cut(s)	4, 490
ApoI	RAATTY	2 cut(s)	452, 1249
ArsI	GACNNNNNNTTYG	4 cut(s)	189, 221, 1316, 1348
Asp700I	GAANNNNTTC	1 cut(s)	1518
AspLEI	GCGC	6 cut(s)	168, 308, 490, 574, 830, 946
AspS9I	GGNCC	2 cut(s)	144, 370
AsuC2I	CCSGG	2 cut(s)	246, 1207
AsuHPI	GGTGA	9 cut(s)	46, 115, 175, 305, 433, 710, 899, 970, 1508
AsuII	TTCGAA	1 cut(s)	1335
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	2 cut(s)	681, 1061
BanI	GGYRCC	2 cut(s)	571, 827
BanII	GRGCYC	3 cut(s)	195, 941, 1389
Bbv12I	GWGCWC	2 cut(s)	651, 941
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	5 cut(s)	287, 661, 745, 749, 802
BceAI	ACGGC	3 cut(s)	44, 80, 415
BciT130I	CCWGG	3 cut(s)	644, 1105, 1468
BciVI	GTATCC	1 cut(s)	1498
BclI	TGATCA	3 cut(s)	600, 1117, 1272
BcnI	CCSGG	2 cut(s)	246, 1207
BcoDI	GTCTC	3 cut(s)	626, 1121, 1443
BfaI	CTAG	3 cut(s)	1173, 1419, 1523
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	4 cut(s)	169, 575, 831, 947
BfuI	GTATCC	1 cut(s)	1498
BisI	GCNGC	5 cut(s)	5, 93, 289, 364, 491
BlsI	GCNGC	5 cut(s)	6, 94, 290, 365, 492
Bme1390I	CCNGG	5 cut(s)	246, 644, 1105, 1207, 1468
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	144, 370
BmiI	GGNNCC	4 cut(s)	17, 146, 573, 829
BmrFI	CCNGG	5 cut(s)	246, 644, 1105, 1207, 1468
BmrI	ACTGGG	1 cut(s)	1518
BmsI	GCATC	3 cut(s)	350, 985, 1396
BmuI	ACTGGG	1 cut(s)	1518
BplI	GAGNNNNNCTC	2 cut(s)	1123, 1155
Bpu14I	TTCGAA	1 cut(s)	1335
BpuMI	CCSGG	2 cut(s)	246, 1207
BsaHI	GRCGYC	4 cut(s)	204, 402, 572, 828
BsaJI	CCNNGG	2 cut(s)	244, 1467
BsaWI	WCCGGW	2 cut(s)	1039, 1141
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 911, 941
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 668, 687
Bse1I	ACTGG	4 cut(s)	146, 1076, 1513, 1542
BseAI	TCCGGA	1 cut(s)	1141
BseBI	CCWGG	3 cut(s)	644, 1105, 1468
BseDI	CCNNGG	2 cut(s)	244, 1467
BseGI	GGATG	8 cut(s)	282, 760, 808, 1000, 1150, 1225, 1244, 1411
BseLI	CCNNNNNNNGG	3 cut(s)	455, 668, 687
BseNI	ACTGG	4 cut(s)	146, 1076, 1513, 1542
BseRI	GAGGAG	3 cut(s)	32, 284, 320
BseSI	GKGCMC	2 cut(s)	681, 1061
BseXI	GCAGC	1 cut(s)	477
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	2 cut(s)	189, 306
BshFI	GGCC	2 cut(s)	145, 1205
BshNI	GGYRCC	2 cut(s)	571, 827
BsiHKAI	GWGCWC	2 cut(s)	651, 941
BsiSI	CCGG	4 cut(s)	246, 1040, 1142, 1206
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	455, 668, 687
BsmAI	GTCTC	3 cut(s)	626, 1121, 1443
BsmBI	CGTCTC	1 cut(s)	1121
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	3 cut(s)	425, 490, 1549
BsnI	GGCC	2 cut(s)	145, 1205
Bsp119I	TTCGAA	1 cut(s)	1335
Bsp1286I	GDGCHC	6 cut(s)	195, 651, 681, 941, 1061, 1389
Bsp13I	TCCGGA	1 cut(s)	1141
Bsp1407I	TGTACA	1 cut(s)	1034
Bsp143I	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
BspANI	GGCC	2 cut(s)	145, 1205
BspEI	TCCGGA	1 cut(s)	1141
BspFNI	CGCG	2 cut(s)	189, 306
BspHI	TCATGA	2 cut(s)	514, 1149
BspLI	GGNNCC	4 cut(s)	17, 146, 573, 829
BspPI	GGATC	2 cut(s)	127, 1479
BspT104I	TTCGAA	1 cut(s)	1335
BspT107I	GGYRCC	2 cut(s)	571, 827
BsrBI	CCGCTC	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	1034
BsrI	ACTGG	4 cut(s)	146, 1076, 1513, 1542
BssECI	CCNNGG	2 cut(s)	244, 1467
BssMI	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
BssNI	GRCGYC	4 cut(s)	204, 402, 572, 828
Bst2UI	CCWGG	3 cut(s)	644, 1105, 1468
Bst4CI	ACNGT	5 cut(s)	121, 551, 612, 1008, 1460
Bst6I	CTCTTC	3 cut(s)	380, 917, 1007
BstACI	GRCGYC	4 cut(s)	204, 402, 572, 828
BstAUI	TGTACA	1 cut(s)	1034
BstBI	TTCGAA	1 cut(s)	1335
BstC8I	GCNNGC	3 cut(s)	191, 663, 1061
BstF5I	GGATG	8 cut(s)	282, 760, 808, 1000, 1150, 1225, 1244, 1411
BstFNI	CGCG	2 cut(s)	189, 306
BstH2I	RGCGCY	4 cut(s)	169, 575, 831, 947
BstHHI	GCGC	6 cut(s)	168, 308, 490, 574, 830, 946
BstKTI	GATC	5 cut(s)	135, 603, 1120, 1275, 1474
BstMAI	GTCTC	3 cut(s)	626, 1121, 1443
BstMBI	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
BstMWI	GCNNNNNNNGC	5 cut(s)	297, 399, 465, 775, 1415
BstNI	CCWGG	3 cut(s)	644, 1105, 1468
BstSCI	CCNGG	5 cut(s)	244, 642, 1103, 1205, 1466
BstSFI	CTRYAG	1 cut(s)	550
BstSLI	GKGCMC	2 cut(s)	681, 1061
BstUI	CGCG	2 cut(s)	189, 306
BstV1I	GCAGC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	1471
BstYI	RGATCY	1 cut(s)	1471
BsuI	GTATCC	1 cut(s)	1498
BsuRI	GGCC	2 cut(s)	145, 1205
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	8 cut(s)	282, 760, 808, 1000, 1150, 1225, 1244, 1411
BtsIMutI	CAGTG	2 cut(s)	608, 1465
Cac8I	GCNNGC	3 cut(s)	191, 663, 1061
CciI	TCATGA	2 cut(s)	514, 1149
CfoI	GCGC	6 cut(s)	168, 308, 490, 574, 830, 946
Cfr13I	GGNCC	2 cut(s)	144, 370
CseI	GACGC	1 cut(s)	391
CsiI	ACCWGGT	1 cut(s)	642
Csp6I	GTAC	3 cut(s)	461, 1004, 1035
CviAII	CATG	3 cut(s)	515, 1150, 1225
CviQI	GTAC	3 cut(s)	461, 1004, 1035
DinI	GGCGCC	2 cut(s)	573, 829
DpnI	GATC	5 cut(s)	134, 602, 1119, 1274, 1473
DpnII	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
DraIII	CACNNNGTG	2 cut(s)	538, 646
Eam1104I	CTCTTC	3 cut(s)	380, 917, 1007
EarI	CTCTTC	3 cut(s)	380, 917, 1007
EciI	GGCGGA	2 cut(s)	79, 275
Ecl136II	GAGCTC	1 cut(s)	939
Eco24I	GRGCYC	3 cut(s)	195, 941, 1389
Eco47I	GGWCC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	939
EcoICRI	GAGCTC	1 cut(s)	939
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	1249
EcoRII	CCWGG	3 cut(s)	642, 1103, 1466
EcoT38I	GRGCYC	3 cut(s)	195, 941, 1389
EgeI	GGCGCC	2 cut(s)	573, 829
EheI	GGCGCC	2 cut(s)	573, 829
Esp3I	CGTCTC	1 cut(s)	1121
FaeI	CATG	3 cut(s)	518, 1153, 1228
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	514, 1149, 1224
FauI	CCCGC	2 cut(s)	194, 311
FbaI	TGATCA	3 cut(s)	600, 1117, 1272
FblI	GTMKAC	1 cut(s)	1361
Fnu4HI	GCNGC	5 cut(s)	5, 93, 289, 364, 491
FokI	GGATG	8 cut(s)	269, 767, 815, 1007, 1157, 1232, 1251, 1418
FriOI	GRGCYC	3 cut(s)	195, 941, 1389
Fsp4HI	GCNGC	5 cut(s)	5, 93, 289, 364, 491
FspBI	CTAG	3 cut(s)	1173, 1419, 1523
GlaI	GCGC	6 cut(s)	167, 307, 489, 573, 829, 945
GluI	GCNGC	5 cut(s)	5, 93, 289, 364, 491
HaeII	RGCGCY	4 cut(s)	169, 575, 831, 947
HaeIII	GGCC	2 cut(s)	145, 1205
HapII	CCGG	4 cut(s)	246, 1040, 1142, 1206
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	6 cut(s)	168, 308, 490, 574, 830, 946
Hin1I	GRCGYC	4 cut(s)	204, 402, 572, 828
Hin1II	CATG	3 cut(s)	518, 1153, 1228
Hin6I	GCGC	6 cut(s)	166, 306, 488, 572, 828, 944
HinP1I	GCGC	6 cut(s)	166, 306, 488, 572, 828, 944
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	5 cut(s)	249, 511, 1281, 1394, 1463
HpaII	CCGG	4 cut(s)	246, 1040, 1142, 1206
HphI	GGTGA	9 cut(s)	46, 115, 175, 305, 433, 710, 899, 970, 1508
Hpy166II	GTNNAC	4 cut(s)	532, 1004, 1037, 1362
Hpy188I	TCNGA	7 cut(s)	132, 337, 359, 450, 510, 546, 1248
Hpy188III	TCNNGA	7 cut(s)	430, 515, 725, 1142, 1150, 1173, 1523
Hpy8I	GTNNAC	4 cut(s)	532, 1004, 1037, 1362
Hpy99I	CGWCG	4 cut(s)	101, 206, 209, 407
HpyAV	CCTTC	6 cut(s)	43, 76, 974, 979, 1078, 1297
HpyCH4III	ACNGT	5 cut(s)	121, 551, 612, 1008, 1460
HpyCH4IV	ACGT	2 cut(s)	204, 1161
HpyCH4V	TGCA	2 cut(s)	615, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	297, 399, 465, 775, 1415
HpySE526I	ACGT	2 cut(s)	204, 1161
Hsp92I	GRCGYC	4 cut(s)	204, 402, 572, 828
Hsp92II	CATG	3 cut(s)	518, 1153, 1228
HspAI	GCGC	6 cut(s)	166, 306, 488, 572, 828, 944
KasI	GGCGCC	2 cut(s)	571, 827
Kpn2I	TCCGGA	1 cut(s)	1141
Ksp22I	TGATCA	3 cut(s)	600, 1117, 1272
Kzo9I	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
LmnI	GCTCC	3 cut(s)	12, 305, 473
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	3 cut(s)	350, 985, 1396
MabI	ACCWGGT	1 cut(s)	642
MaeI	CTAG	3 cut(s)	1173, 1419, 1523
MaeII	ACGT	2 cut(s)	204, 1161
MaeIII	GTNAC	4 cut(s)	121, 730, 838, 1391
MalI	GATC	5 cut(s)	134, 602, 1119, 1274, 1473
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
MboII	GAAGA	6 cut(s)	211, 367, 934, 1024, 1036, 1039
MflI	RGATCY	1 cut(s)	1471
MhlI	GDGCHC	6 cut(s)	195, 651, 681, 941, 1061, 1389
MluCI	AATT	7 cut(s)	259, 452, 898, 1030, 1109, 1249, 1311
Mly113I	GGCGCC	2 cut(s)	572, 828
MlyI	GAGTC	1 cut(s)	1388
MmeI	TCCRAC	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	1141
MroXI	GAANNNNTTC	1 cut(s)	1518
MseI	TTAA	3 cut(s)	792, 897, 1455
MspI	CCGG	4 cut(s)	246, 1040, 1142, 1206
MspR9I	CCNGG	5 cut(s)	246, 644, 1105, 1207, 1468
Mva1269I	GAATGC	3 cut(s)	425, 490, 1549
MvaI	CCWGG	3 cut(s)	644, 1105, 1468
MvnI	CGCG	2 cut(s)	189, 306
MwoI	GCNNNNNNNGC	5 cut(s)	297, 399, 465, 775, 1415
NarI	GGCGCC	2 cut(s)	572, 828
NciI	CCSGG	2 cut(s)	246, 1207
NdeII	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
NlaIII	CATG	3 cut(s)	518, 1153, 1228
NlaIV	GGNNCC	4 cut(s)	17, 146, 573, 829
NmeAIII	GCCGAG	1 cut(s)	920
NmuCI	GTSAC	3 cut(s)	121, 730, 1391
NspV	TTCGAA	1 cut(s)	1335
PagI	TCATGA	2 cut(s)	514, 1149
PcsI	WCGNNNNNNNCGW	1 cut(s)	1332
PctI	GAATGC	3 cut(s)	425, 490, 1549
PdmI	GAANNNNTTC	1 cut(s)	1518
PfeI	GAWTC	4 cut(s)	249, 511, 1281, 1463
PkrI	GCNGC	5 cut(s)	6, 94, 290, 365, 492
PleI	GAGTC	1 cut(s)	1388
PluTI	GGCGCC	2 cut(s)	575, 831
PpsI	GAGTC	1 cut(s)	1388
PpuMI	RGGWCCY	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	941
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	3 cut(s)	642, 1103, 1466
PspGI	CCWGG	3 cut(s)	642, 1103, 1466
PspN4I	GGNNCC	4 cut(s)	17, 146, 573, 829
PspPI	GGNCC	2 cut(s)	144, 370
PspPPI	RGGWCCY	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	1471
RsaI	GTAC	3 cut(s)	462, 1005, 1036
RsaNI	GTAC	3 cut(s)	461, 1004, 1035
SacI	GAGCTC	1 cut(s)	941
SaqAI	TTAA	3 cut(s)	792, 897, 1455
SatI	GCNGC	5 cut(s)	5, 93, 289, 364, 491
Sau3AI	GATC	5 cut(s)	132, 600, 1117, 1272, 1471
Sau96I	GGNCC	2 cut(s)	144, 370
SchI	GAGTC	1 cut(s)	1388
ScrFI	CCNGG	5 cut(s)	246, 644, 1105, 1207, 1468
SduI	GDGCHC	6 cut(s)	195, 651, 681, 941, 1061, 1389
SexAI	ACCWGGT	1 cut(s)	642
SfaNI	GCATC	3 cut(s)	350, 985, 1396
SfcI	CTRYAG	1 cut(s)	550
SfoI	GGCGCC	2 cut(s)	573, 829
SfuI	TTCGAA	1 cut(s)	1335
SinI	GGWCC	1 cut(s)	370
Sse9I	AATT	7 cut(s)	259, 452, 898, 1030, 1109, 1249, 1311
SspDI	GGCGCC	2 cut(s)	571, 827
SspMI	CTAG	3 cut(s)	1173, 1419, 1523
SstI	GAGCTC	1 cut(s)	941
StyD4I	CCNGG	5 cut(s)	244, 642, 1103, 1205, 1466
TaaI	ACNGT	5 cut(s)	121, 551, 612, 1008, 1460
TaiI	ACGT	2 cut(s)	207, 1164
TaqI	TCGA	5 cut(s)	99, 201, 321, 651, 1335
TasI	AATT	7 cut(s)	259, 452, 898, 1030, 1109, 1249, 1311
TatI	WGTACW	2 cut(s)	1003, 1034
TauI	GCSGC	3 cut(s)	95, 291, 366
TfiI	GAWTC	4 cut(s)	249, 511, 1281, 1463
Tru1I	TTAA	3 cut(s)	792, 897, 1455
Tru9I	TTAA	3 cut(s)	792, 897, 1455
TscAI	CASTG	2 cut(s)	615, 1465
TseFI	GTSAC	3 cut(s)	121, 730, 1391
TseI	GCWGC	2 cut(s)	4, 490
Tsp45I	GTSAC	3 cut(s)	121, 730, 1391
TspDTI	ATGAA	2 cut(s)	367, 669
TspGWI	ACGGA	1 cut(s)	460
TspRI	CASTG	2 cut(s)	615, 1465
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	452, 1249
XbaI	TCTAGA	2 cut(s)	1172, 1522
XmiI	GTMKAC	1 cut(s)	1361
XmnI	GAANNNNTTC	1 cut(s)	1518
XspI	CTAG	3 cut(s)	1173, 1419, 1523
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.