Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00241

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

42284 .. 43840

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGCTGCTTCGCCGGAACCTCTCCCCCAAGCCCTTCTCTCTCCTCCACTCAATCACCGCTGTCCCCTTCTCCACCTCCACCTCCGCCGTCGATTTCCTCCACTCCTACACCGTCACCCCTCCGATCGAAAACTGGCCCCAACACCTCCACCCAAAGCGCCTCATCACTCGCGAGCCCAAACTCGACCTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGGATTTCACCATAATTACCACACCTACCACGCCATCATCCGCCGCCTCCTTCGCTCCCGCGCTTTTCACCTCGACCTCTTCATCTCCCTAATCCGCAATTACGGCGTCGTTTCACGCCCTAAACTCGCCTTCAAGACATTTATCACCATTCCGAAATTCGGCACCCAACGATCCGTGAGGTCCTTGAATGCGTTGCTGAACGCTTTGGTTCAGAATCCGAGTACAGATTGGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGAAATGATTTGGAGACTGCACACCAGGTGCTCGATGAAATGCCTGCCATGGGATTTGTGCCCAATGCGGCGCGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATGTGACTACATATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGGCGCCAATGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGAAGTCGGGCGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGTACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACGCCGGATAATGCTGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAGTGTGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGACGAGTGAGCCTCCAGATGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGATGTGGGGGAGTTGTGTGAGGCAGGGAGGTTATGGGATGACATGGTGGAGAAAGGATATTCTCTGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAAGAGGGAATTAGGATTTTGGACGAGATGTTCGAAAAAGGCTATTTGCCGAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCAGTAGAGGATGCTGAAATGGATAGAGTAATATCTATGTCAATATCAAGTGGAGACATTAACAGTGATTCCTGGGATCTTTTCCTTACTAAAGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAGACAGAATACTACTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

481

Amino Acids

54.86

Weight (kDa)

6.68

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	195 - 255	5.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	203 - 235	4.6e-09	PPR repeat
PPR_2	PF13041	206 - 255	2.1e-16	PPR repeat family
PPR	PF01535	210 - 239	2.6e-08	PPR repeat
PPR_1	PF12854	238 - 270	2.1e-06	PPR repeat
PPR_2	PF13041	242 - 278	4.3e-07	PPR repeat family
PPR	PF01535	244 - 273	2e-06	PPR repeat
PPR_1	PF12854	307 - 338	8.1e-06	PPR repeat
PPR_2	PF13041	345 - 394	9.5e-18	PPR repeat family
PPR_1	PF12854	345 - 374	1.2e-07	PPR repeat
PPR_3	PF13812	368 - 425	2.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	376 - 408	2.8e-09	PPR repeat
PPR_2	PF13041	381 - 429	2.2e-14	PPR repeat family
PPR	PF01535	383 - 412	2.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	389, 572, 719
AccI	GTMKAC	1 cut(s)	1253
AccII	CGCG	3 cut(s)	171, 288, 561
AciI	CCGC	8 cut(s)	57, 84, 268, 271, 286, 322, 556, 785
AclWI	GGATC	2 cut(s)	393, 1371
AcsI	RAATTY	2 cut(s)	383, 1141
AcyI	GRCGYC	2 cut(s)	333, 720
AdeI	CACNNNGTG	2 cut(s)	468, 516
AfaI	GTAC	2 cut(s)	451, 897
AfiI	CCNNNNNNNGG	2 cut(s)	386, 538
AgsI	TTSAA	4 cut(s)	361, 415, 752, 916
AjnI	CCWGG	3 cut(s)	512, 995, 1358
AloI	GAACNNNNNNTCC	2 cut(s)	1208, 1240
AluBI	AGCT	3 cut(s)	670, 755, 831
AluI	AGCT	3 cut(s)	670, 755, 831
Alw21I	GWGCWC	2 cut(s)	521, 833
Alw26I	GTCTC	3 cut(s)	496, 1013, 1335
AlwI	GGATC	2 cut(s)	393, 1371
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	383, 1141
ArsI	GACNNNNNNTTYG	2 cut(s)	1208, 1240
Asp700I	GAANNNNTTC	1 cut(s)	1410
AspLEI	GCGC	5 cut(s)	159, 290, 561, 722, 838
AspS9I	GGNCC	2 cut(s)	135, 408
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	8 cut(s)	46, 106, 227, 287, 364, 602, 862, 1400
AsuII	TTCGAA	1 cut(s)	1227
AvaII	GGWCC	1 cut(s)	408
BaeGI	GKGCMC	2 cut(s)	551, 953
BanI	GGYRCC	3 cut(s)	389, 572, 719
BanII	GRGCYC	3 cut(s)	177, 833, 1281
Bbv12I	GWGCWC	2 cut(s)	521, 833
BccI	CCATC	4 cut(s)	269, 637, 641, 694
BceAI	ACGGC	2 cut(s)	71, 346
BciT130I	CCWGG	3 cut(s)	514, 997, 1360
BciVI	GTATCC	1 cut(s)	1390
BclI	TGATCA	2 cut(s)	1009, 1164
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	496, 1013, 1335
BfaI	CTAG	1 cut(s)	1415
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	3 cut(s)	160, 723, 839
BfuI	GTATCC	1 cut(s)	1390
BisI	GCNGC	3 cut(s)	5, 271, 557
BlsI	GCNGC	3 cut(s)	6, 272, 558
Bme1390I	CCNGG	4 cut(s)	228, 514, 997, 1360
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	135, 408
BmiI	GGNNCC	5 cut(s)	17, 137, 391, 574, 721
BmrFI	CCNGG	4 cut(s)	228, 514, 997, 1360
BmrI	ACTGGG	1 cut(s)	1410
BmsI	GCATC	2 cut(s)	877, 1288
BmuI	ACTGGG	1 cut(s)	1410
BplI	GAGNNNNNCTC	2 cut(s)	1015, 1047
BpmI	CTGGAG	1 cut(s)	1017
Bpu14I	TTCGAA	1 cut(s)	1227
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	2 cut(s)	333, 720
BsaJI	CCNNGG	3 cut(s)	226, 536, 1359
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 803, 833
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 538
Bse1I	ACTGG	4 cut(s)	137, 968, 1405, 1434
BseBI	CCWGG	3 cut(s)	514, 997, 1360
BseDI	CCNNGG	3 cut(s)	226, 536, 1359
BseGI	GGATG	6 cut(s)	264, 652, 700, 892, 1117, 1303
BseLI	CCNNNNNNNGG	2 cut(s)	386, 538
BseMII	CTCAG	1 cut(s)	1302
BseNI	ACTGG	4 cut(s)	137, 968, 1405, 1434
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	2 cut(s)	551, 953
BsgI	GTGCAG	1 cut(s)	491
Bsh1236I	CGCG	3 cut(s)	171, 288, 561
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	3 cut(s)	389, 572, 719
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	2 cut(s)	521, 833
BsiSI	CCGG	3 cut(s)	13, 228, 932
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	386, 538
BsmAI	GTCTC	3 cut(s)	496, 1013, 1335
BsmBI	CGTCTC	1 cut(s)	1013
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	2 cut(s)	421, 1441
BsnI	GGCC	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	1227
Bsp1286I	GDGCHC	6 cut(s)	177, 521, 551, 833, 953, 1281
Bsp143I	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
Bsp19I	CCATGG	1 cut(s)	536
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	8 cut(s)	57, 84, 268, 271, 286, 322, 556, 785
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	1301
BspFNI	CGCG	3 cut(s)	171, 288, 561
BspHI	TCATGA	1 cut(s)	1041
BspLI	GGNNCC	5 cut(s)	17, 137, 391, 574, 721
BspPI	GGATC	2 cut(s)	393, 1371
BspT104I	TTCGAA	1 cut(s)	1227
BspT107I	GGYRCC	3 cut(s)	389, 572, 719
BsrI	ACTGG	4 cut(s)	137, 968, 1405, 1434
BssECI	CCNNGG	3 cut(s)	226, 536, 1359
BssMI	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
BssNI	GRCGYC	2 cut(s)	333, 720
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	3 cut(s)	514, 997, 1360
Bst4CI	ACNGT	4 cut(s)	112, 481, 900, 1352
Bst6I	CTCTTC	3 cut(s)	311, 809, 899
BstACI	GRCGYC	2 cut(s)	333, 720
BstBI	TTCGAA	1 cut(s)	1227
BstC8I	GCNNGC	4 cut(s)	173, 533, 929, 953
BstDEI	CTNAG	1 cut(s)	1288
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	6 cut(s)	264, 652, 700, 892, 1117, 1303
BstFNI	CGCG	3 cut(s)	171, 288, 561
BstH2I	RGCGCY	3 cut(s)	160, 723, 839
BstHHI	GCGC	5 cut(s)	159, 290, 561, 722, 838
BstKTI	GATC	5 cut(s)	126, 401, 1012, 1167, 1366
BstMAI	GTCTC	3 cut(s)	496, 1013, 1335
BstMBI	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	3 cut(s)	279, 330, 667
BstNI	CCWGG	3 cut(s)	514, 997, 1360
BstSCI	CCNGG	4 cut(s)	226, 512, 995, 1358
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	2 cut(s)	551, 953
BstUI	CGCG	3 cut(s)	171, 288, 561
BstX2I	RGATCY	1 cut(s)	1363
BstYI	RGATCY	1 cut(s)	1363
BsuI	GTATCC	1 cut(s)	1390
BsuRI	GGCC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	6 cut(s)	264, 652, 700, 892, 1117, 1303
BtsIMutI	CAGTG	1 cut(s)	1357
BtuMI	TCGCGA	1 cut(s)	171
Cac8I	GCNNGC	4 cut(s)	173, 533, 929, 953
CciI	TCATGA	1 cut(s)	1041
CfoI	GCGC	5 cut(s)	159, 290, 561, 722, 838
Cfr13I	GGNCC	2 cut(s)	135, 408
CseI	GACGC	1 cut(s)	322
CsiI	ACCWGGT	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	450, 896
CviAII	CATG	3 cut(s)	537, 1042, 1117
CviQI	GTAC	2 cut(s)	450, 896
DdeI	CTNAG	1 cut(s)	1288
DinI	GGCGCC	1 cut(s)	721
DpnI	GATC	5 cut(s)	125, 400, 1011, 1166, 1365
DpnII	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
DraIII	CACNNNGTG	2 cut(s)	468, 516
Eam1104I	CTCTTC	3 cut(s)	311, 809, 899
EarI	CTCTTC	3 cut(s)	311, 809, 899
EciI	GGCGGA	2 cut(s)	73, 257
Ecl136II	GAGCTC	1 cut(s)	831
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	3 cut(s)	177, 833, 1281
Eco47I	GGWCC	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	1141
EcoRII	CCWGG	3 cut(s)	512, 995, 1358
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	3 cut(s)	177, 833, 1281
EgeI	GGCGCC	1 cut(s)	721
EheI	GGCGCC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	536
Esp3I	CGTCTC	1 cut(s)	1013
FaeI	CATG	3 cut(s)	540, 1045, 1120
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	3 cut(s)	536, 1041, 1116
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	2 cut(s)	1009, 1164
FblI	GTMKAC	1 cut(s)	1253
Fnu4HI	GCNGC	3 cut(s)	5, 271, 557
FokI	GGATG	6 cut(s)	251, 659, 707, 899, 1124, 1310
FriOI	GRGCYC	3 cut(s)	177, 833, 1281
Fsp4HI	GCNGC	3 cut(s)	5, 271, 557
FspBI	CTAG	1 cut(s)	1415
GlaI	GCGC	5 cut(s)	158, 289, 560, 721, 837
GluI	GCNGC	3 cut(s)	5, 271, 557
GsuI	CTGGAG	1 cut(s)	1017
HaeII	RGCGCY	3 cut(s)	160, 723, 839
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	3 cut(s)	13, 228, 932
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	5 cut(s)	159, 290, 561, 722, 838
Hin1I	GRCGYC	2 cut(s)	333, 720
Hin1II	CATG	3 cut(s)	540, 1045, 1120
Hin6I	GCGC	5 cut(s)	157, 288, 559, 720, 836
HinP1I	GCGC	5 cut(s)	157, 288, 559, 720, 836
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	4 cut(s)	442, 1173, 1286, 1355
HpaII	CCGG	3 cut(s)	13, 228, 932
HphI	GGTGA	8 cut(s)	46, 106, 227, 287, 364, 602, 862, 1400
Hpy166II	GTNNAC	3 cut(s)	462, 896, 1254
Hpy188I	TCNGA	6 cut(s)	123, 381, 441, 447, 476, 1140
Hpy188III	TCNNGA	7 cut(s)	170, 361, 617, 1034, 1042, 1065, 1415
Hpy8I	GTNNAC	3 cut(s)	462, 896, 1254
Hpy99I	CGWCG	2 cut(s)	92, 338
HpyAV	CCTTC	7 cut(s)	43, 76, 287, 367, 866, 871, 970
HpyCH4III	ACNGT	4 cut(s)	112, 481, 900, 1352
HpyCH4IV	ACGT	1 cut(s)	1053
HpyCH4V	TGCA	2 cut(s)	508, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	279, 330, 667
HpyF3I	CTNAG	1 cut(s)	1288
HpySE526I	ACGT	1 cut(s)	1053
Hsp92I	GRCGYC	2 cut(s)	333, 720
Hsp92II	CATG	3 cut(s)	540, 1045, 1120
HspAI	GCGC	5 cut(s)	157, 288, 559, 720, 836
KasI	GGCGCC	1 cut(s)	719
Ksp22I	TGATCA	2 cut(s)	1009, 1164
Kzo9I	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
LmnI	GCTCC	1 cut(s)	287
LweI	GCATC	2 cut(s)	877, 1288
MabI	ACCWGGT	1 cut(s)	512
MaeI	CTAG	1 cut(s)	1415
MaeII	ACGT	1 cut(s)	1053
MaeIII	GTNAC	4 cut(s)	112, 622, 730, 1283
MalI	GATC	5 cut(s)	125, 400, 1011, 1166, 1365
MboI	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
MboII	GAAGA	6 cut(s)	193, 298, 826, 916, 928, 931
MflI	RGATCY	1 cut(s)	1363
MhlI	GDGCHC	6 cut(s)	177, 521, 551, 833, 953, 1281
MluCI	AATT	8 cut(s)	241, 325, 383, 790, 922, 1001, 1141, 1203
Mly113I	GGCGCC	1 cut(s)	720
MlyI	GAGTC	1 cut(s)	1280
MroXI	GAANNNNTTC	1 cut(s)	1410
MseI	TTAA	3 cut(s)	684, 789, 1347
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	3 cut(s)	13, 228, 932
MspR9I	CCNGG	4 cut(s)	228, 514, 997, 1360
Mva1269I	GAATGC	2 cut(s)	421, 1441
MvaI	CCWGG	3 cut(s)	514, 997, 1360
MvnI	CGCG	3 cut(s)	171, 288, 561
MwoI	GCNNNNNNNGC	3 cut(s)	279, 330, 667
NarI	GGCGCC	1 cut(s)	720
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
NlaIII	CATG	3 cut(s)	540, 1045, 1120
NlaIV	GGNNCC	5 cut(s)	17, 137, 391, 574, 721
NmeAIII	GCCGAG	1 cut(s)	812
NmuCI	GTSAC	3 cut(s)	112, 622, 1283
NruI	TCGCGA	1 cut(s)	171
NspV	TTCGAA	1 cut(s)	1227
PagI	TCATGA	1 cut(s)	1041
PcsI	WCGNNNNNNNCGW	1 cut(s)	1224
PctI	GAATGC	2 cut(s)	421, 1441
PdmI	GAANNNNTTC	1 cut(s)	1410
PfeI	GAWTC	3 cut(s)	442, 1173, 1355
PkrI	GCNGC	3 cut(s)	6, 272, 558
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	1 cut(s)	1280
PluTI	GGCGCC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	1280
PpuMI	RGGWCCY	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	408
Psp6I	CCWGG	3 cut(s)	512, 995, 1358
PspGI	CCWGG	3 cut(s)	512, 995, 1358
PspN4I	GGNNCC	5 cut(s)	17, 137, 391, 574, 721
PspPI	GGNCC	2 cut(s)	135, 408
PspPPI	RGGWCCY	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	1363
PvuI	CGATCG	1 cut(s)	126
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	2 cut(s)	451, 897
RsaNI	GTAC	2 cut(s)	450, 896
SacI	GAGCTC	1 cut(s)	833
SaqAI	TTAA	3 cut(s)	684, 789, 1347
SatI	GCNGC	3 cut(s)	5, 271, 557
Sau3AI	GATC	5 cut(s)	123, 398, 1009, 1164, 1363
Sau96I	GGNCC	2 cut(s)	135, 408
SchI	GAGTC	1 cut(s)	1280
ScrFI	CCNGG	4 cut(s)	228, 514, 997, 1360
SduI	GDGCHC	6 cut(s)	177, 521, 551, 833, 953, 1281
SexAI	ACCWGGT	1 cut(s)	512
SfaNI	GCATC	2 cut(s)	877, 1288
SfcI	CTRYAG	1 cut(s)	480
SfoI	GGCGCC	1 cut(s)	721
SfuI	TTCGAA	1 cut(s)	1227
SinI	GGWCC	1 cut(s)	408
Sse9I	AATT	8 cut(s)	241, 325, 383, 790, 922, 1001, 1141, 1203
SsiI	CCGC	8 cut(s)	57, 84, 268, 271, 286, 322, 556, 785
SspDI	GGCGCC	1 cut(s)	719
SspMI	CTAG	1 cut(s)	1415
SstI	GAGCTC	1 cut(s)	833
StyD4I	CCNGG	4 cut(s)	226, 512, 995, 1358
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	4 cut(s)	112, 481, 900, 1352
TaiI	ACGT	1 cut(s)	1056
TaqI	TCGA	6 cut(s)	90, 126, 183, 300, 521, 1227
TasI	AATT	8 cut(s)	241, 325, 383, 790, 922, 1001, 1141, 1203
TatI	WGTACW	2 cut(s)	449, 895
TauI	GCSGC	2 cut(s)	273, 559
TfiI	GAWTC	3 cut(s)	442, 1173, 1355
Tru1I	TTAA	3 cut(s)	684, 789, 1347
Tru9I	TTAA	3 cut(s)	684, 789, 1347
TscAI	CASTG	1 cut(s)	1357
TseFI	GTSAC	3 cut(s)	112, 622, 1283
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	3 cut(s)	112, 622, 1283
TspDTI	ATGAA	2 cut(s)	298, 539
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	1357
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	2 cut(s)	383, 1141
XbaI	TCTAGA	1 cut(s)	1414
XmiI	GTMKAC	1 cut(s)	1253
XmnI	GAANNNNTTC	1 cut(s)	1410
XspI	CTAG	1 cut(s)	1415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.