PPR repeat
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 199 - 247 | 8.8e-06 | PPR repeat family |
| PPR_1 | PF12854 | 302 - 333 | 4.4e-06 | PPR repeat |
| PPR_2 | PF13041 | 305 - 344 | 1.9e-07 | PPR repeat family |
| PPR | PF01535 | 307 - 335 | 2e-06 | PPR repeat |
| PPR_2 | PF13041 | 347 - 385 | 3.8e-07 | PPR repeat family |
| PPR | PF01535 | 348 - 377 | 3.9e-06 | PPR repeat |
| PPR_1 | PF12854 | 377 - 407 | 2.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 379 - 426 | 5.1e-15 | PPR repeat family |
| PPR | PF01535 | 383 - 412 | 2.4e-06 | PPR repeat |
| PPR_long | PF17177 | 397 - 513 | 7.9e-06 | Pentacotripeptide-repeat region of PRORP |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1472 |
| Acc16I | TGCGCA | 1 cut(s) | 1074 |
| AccBSI | CCGCTC | 1 cut(s) | 266 |
| AccI | GTMKAC | 2 cut(s) | 1250, 1766 |
| AccII | CGCG | 1 cut(s) | 581 |
| AcsI | RAATTY | 5 cut(s) | 745, 1033, 1348, 1499, 2143 |
| AcuI | CTGAAG | 2 cut(s) | 1463, 1670 |
| AcyI | GRCGYC | 2 cut(s) | 126, 477 |
| AfaI | GTAC | 1 cut(s) | 434 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1017, 1927, 2042, 2065 |
| AgsI | TTSAA | 4 cut(s) | 787, 979, 1553, 1558 |
| AjnI | CCWGG | 1 cut(s) | 468 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 37 |
| Alw21I | GWGCWC | 1 cut(s) | 666 |
| Alw26I | GTCTC | 4 cut(s) | 265, 1723, 1751, 2133 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1808, 1829 |
| AoxI | GGCC | 7 cut(s) | 471, 654, 1292, 1343, 1773, 1918, 2328 |
| ApeKI | GCWGC | 9 cut(s) | 565, 1691, 1712, 1796, 1817, 1826, 2069, 2183, 2222 |
| ApoI | RAATTY | 5 cut(s) | 745, 1033, 1348, 1499, 2143 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2058 |
| AspLEI | GCGC | 4 cut(s) | 99, 156, 583, 1075 |
| AspS9I | GGNCC | 3 cut(s) | 654, 703, 2329 |
| AsuC2I | CCSGG | 3 cut(s) | 707, 1136, 1241 |
| AsuII | TTCGAA | 1 cut(s) | 899 |
| AvaII | GGWCC | 1 cut(s) | 703 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2277, 2310 |
| BanII | GRGCYC | 2 cut(s) | 174, 666 |
| BbsI | GAAGAC | 1 cut(s) | 129 |
| Bbv12I | GWGCWC | 1 cut(s) | 666 |
| BbvCI | CCTCAGC | 3 cut(s) | 1200, 1656, 1801 |
| BbvI | GCAGC | 9 cut(s) | 577, 1699, 1703, 1783, 1804, 1813, 2056, 2170, 2209 |
| BceAI | ACGGC | 3 cut(s) | 568, 1891, 2343 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 310, 344 |
| BciT130I | CCWGG | 1 cut(s) | 470 |
| BciVI | GTATCC | 3 cut(s) | 1132, 1264, 1519 |
| BclI | TGATCA | 1 cut(s) | 618 |
| BcnI | CCSGG | 3 cut(s) | 707, 1136, 1241 |
| BcoDI | GTCTC | 4 cut(s) | 265, 1723, 1751, 2133 |
| BfaI | CTAG | 4 cut(s) | 44, 1737, 2037, 2344 |
| BfmI | CTRYAG | 2 cut(s) | 1767, 2223 |
| BfoI | RGCGCY | 1 cut(s) | 157 |
| BfuI | GTATCC | 3 cut(s) | 1132, 1264, 1519 |
| BmcAI | AGTACT | 1 cut(s) | 434 |
| Bme1390I | CCNGG | 4 cut(s) | 470, 707, 1136, 1241 |
| Bme18I | GGWCC | 1 cut(s) | 703 |
| BmgT120I | GGNCC | 3 cut(s) | 654, 703, 2329 |
| BmiI | GGNNCC | 4 cut(s) | 705, 2173, 2308, 2331 |
| BmrFI | CCNGG | 4 cut(s) | 470, 707, 1136, 1241 |
| BmsI | GCATC | 4 cut(s) | 174, 1176, 1291, 1480 |
| BpiI | GAAGAC | 1 cut(s) | 129 |
| BpmI | CTGGAG | 2 cut(s) | 668, 1806 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1200, 1656, 1662, 1801 |
| Bpu14I | TTCGAA | 1 cut(s) | 899 |
| BpuEI | CTTGAG | 1 cut(s) | 650 |
| BpuMI | CCSGG | 3 cut(s) | 707, 1136, 1241 |
| BsaBI | GATNNNNATC | 1 cut(s) | 617 |
| BsaHI | GRCGYC | 2 cut(s) | 126, 477 |
| BsaJI | CCNNGG | 6 cut(s) | 468, 549, 657, 1016, 1962, 2266 |
| BsaWI | WCCGGW | 1 cut(s) | 609 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 221, 251, 431, 461, 792, 822, 932, 962 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1017, 1927, 2042, 2065 |
| Bse118I | RCCGGY | 1 cut(s) | 473 |
| Bse1I | ACTGG | 1 cut(s) | 424 |
| Bse3DI | GCAATG | 2 cut(s) | 882, 1186 |
| Bse8I | GATNNNNATC | 1 cut(s) | 617 |
| BseBI | CCWGG | 1 cut(s) | 470 |
| BseDI | CCNNGG | 6 cut(s) | 468, 549, 657, 1016, 1962, 2266 |
| BseJI | GATNNNNATC | 1 cut(s) | 617 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1017, 1927, 2042, 2065 |
| BseMI | GCAATG | 2 cut(s) | 882, 1186 |
| BseMII | CTCAG | 8 cut(s) | 1181, 1191, 1299, 1583, 1647, 1815, 2209, 2229 |
| BseNI | ACTGG | 1 cut(s) | 424 |
| BseXI | GCAGC | 9 cut(s) | 577, 1699, 1703, 1783, 1804, 1813, 2056, 2170, 2209 |
| BseYI | CCCAGC | 3 cut(s) | 414, 796, 2302 |
| Bsh1236I | CGCG | 1 cut(s) | 581 |
| Bsh1285I | CGRYCG | 1 cut(s) | 139 |
| BshFI | GGCC | 7 cut(s) | 473, 656, 1294, 1345, 1775, 1920, 2330 |
| BsiEI | CGRYCG | 1 cut(s) | 139 |
| BsiHKAI | GWGCWC | 1 cut(s) | 666 |
| BsiSI | CCGG | 8 cut(s) | 273, 474, 532, 610, 701, 707, 1136, 1241 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1017, 1927, 2042, 2065 |
| BsmAI | GTCTC | 4 cut(s) | 265, 1723, 1751, 2133 |
| BsmBI | CGTCTC | 1 cut(s) | 265 |
| BsmI | GAATGC | 2 cut(s) | 919, 1006 |
| BsnI | GGCC | 7 cut(s) | 473, 656, 1294, 1345, 1775, 1920, 2330 |
| Bsp119I | TTCGAA | 1 cut(s) | 899 |
| Bsp1286I | GDGCHC | 2 cut(s) | 174, 666 |
| Bsp143I | GATC | 3 cut(s) | 618, 1423, 2241 |
| Bsp19I | CCATGG | 2 cut(s) | 549, 657 |
| BspANI | GGCC | 7 cut(s) | 473, 656, 1294, 1345, 1775, 1920, 2330 |
| BspCNI | CTCAG | 8 cut(s) | 1182, 1192, 1300, 1584, 1648, 1814, 2208, 2230 |
| BspFNI | CGCG | 1 cut(s) | 581 |
| BspLI | GGNNCC | 4 cut(s) | 705, 2173, 2308, 2331 |
| BspMAI | CTGCAG | 1 cut(s) | 2227 |
| BspT104I | TTCGAA | 1 cut(s) | 899 |
| BsrBI | CCGCTC | 1 cut(s) | 266 |
| BsrDI | GCAATG | 2 cut(s) | 882, 1186 |
| BsrFI | RCCGGY | 1 cut(s) | 473 |
| BsrI | ACTGG | 1 cut(s) | 424 |
| BssAI | RCCGGY | 1 cut(s) | 473 |
| BssECI | CCNNGG | 6 cut(s) | 468, 549, 657, 1016, 1962, 2266 |
| BssMI | GATC | 3 cut(s) | 618, 1423, 2241 |
| BssNAI | GTATAC | 1 cut(s) | 1251 |
| BssNI | GRCGYC | 2 cut(s) | 126, 477 |
| BssT1I | CCWWGG | 3 cut(s) | 549, 657, 1962 |
| Bst1107I | GTATAC | 1 cut(s) | 1251 |
| Bst2UI | CCWGG | 1 cut(s) | 470 |
| Bst4CI | ACNGT | 4 cut(s) | 394, 1030, 2100, 2267 |
| Bst6I | CTCTTC | 1 cut(s) | 1993 |
| BstACI | GRCGYC | 2 cut(s) | 126, 477 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2222, 2231 |
| BstBI | TTCGAA | 1 cut(s) | 899 |
| BstC8I | GCNNGC | 4 cut(s) | 152, 475, 1459, 1851 |
| BstDSI | CCRYGG | 3 cut(s) | 549, 657, 2266 |
| BstFNI | CGCG | 1 cut(s) | 581 |
| BstH2I | RGCGCY | 1 cut(s) | 157 |
| BstHHI | GCGC | 4 cut(s) | 99, 156, 583, 1075 |
| BstKTI | GATC | 3 cut(s) | 621, 1426, 2244 |
| BstMAI | GTCTC | 4 cut(s) | 265, 1723, 1751, 2133 |
| BstMBI | GATC | 3 cut(s) | 618, 1423, 2241 |
| BstMCI | CGRYCG | 1 cut(s) | 139 |
| BstNI | CCWGG | 1 cut(s) | 470 |
| BstNSI | RCATGY | 1 cut(s) | 2076 |
| BstSCI | CCNGG | 4 cut(s) | 468, 705, 1134, 1239 |
| BstSFI | CTRYAG | 2 cut(s) | 1767, 2223 |
| BstUI | CGCG | 1 cut(s) | 581 |
| BstV1I | GCAGC | 9 cut(s) | 577, 1699, 1703, 1783, 1804, 1813, 2056, 2170, 2209 |
| BstV2I | GAAGAC | 1 cut(s) | 129 |
| BstZ17I | GTATAC | 1 cut(s) | 1251 |
| BsuI | GTATCC | 3 cut(s) | 1132, 1264, 1519 |
| BsuRI | GGCC | 7 cut(s) | 473, 656, 1294, 1345, 1775, 1920, 2330 |
| BtgI | CCRYGG | 3 cut(s) | 549, 657, 2266 |
| BtgZI | GCGATG | 1 cut(s) | 2055 |
| BtsI | GCAGTG | 1 cut(s) | 2130 |
| BtsIMutI | CAGTG | 2 cut(s) | 1776, 2130 |
| Cac8I | GCNNGC | 4 cut(s) | 152, 475, 1459, 1851 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1808, 1829 |
| CfoI | GCGC | 4 cut(s) | 99, 156, 583, 1075 |
| Cfr10I | RCCGGY | 1 cut(s) | 473 |
| Cfr13I | GGNCC | 3 cut(s) | 654, 703, 2329 |
| CseI | GACGC | 3 cut(s) | 134, 466, 587 |
| Csp6I | GTAC | 1 cut(s) | 433 |
| CviAII | CATG | 3 cut(s) | 550, 658, 2073 |
| CviQI | GTAC | 1 cut(s) | 433 |
| DpnI | GATC | 3 cut(s) | 620, 1425, 2243 |
| DpnII | GATC | 3 cut(s) | 618, 1423, 2241 |
| Eam1104I | CTCTTC | 1 cut(s) | 1993 |
| EarI | CTCTTC | 1 cut(s) | 1993 |
| EciI | GGCGGA | 4 cut(s) | 53, 305, 410, 1073 |
| Ecl136II | GAGCTC | 1 cut(s) | 664 |
| Eco130I | CCWWGG | 3 cut(s) | 549, 657, 1962 |
| Eco147I | AGGCCT | 1 cut(s) | 1294 |
| Eco24I | GRGCYC | 2 cut(s) | 174, 666 |
| Eco32I | GATATC | 2 cut(s) | 2208, 2314 |
| Eco47I | GGWCC | 1 cut(s) | 703 |
| Eco53kI | GAGCTC | 1 cut(s) | 664 |
| Eco57I | CTGAAG | 2 cut(s) | 1463, 1670 |
| EcoICRI | GAGCTC | 1 cut(s) | 664 |
| EcoRI | GAATTC | 1 cut(s) | 745 |
| EcoRII | CCWGG | 1 cut(s) | 468 |
| EcoRV | GATATC | 2 cut(s) | 2208, 2314 |
| EcoT14I | CCWWGG | 3 cut(s) | 549, 657, 1962 |
| EcoT22I | ATGCAT | 1 cut(s) | 1990 |
| EcoT38I | GRGCYC | 2 cut(s) | 174, 666 |
| ErhI | CCWWGG | 3 cut(s) | 549, 657, 1962 |
| Esp3I | CGTCTC | 1 cut(s) | 265 |
| FaeI | CATG | 3 cut(s) | 553, 661, 2076 |
| FatI | CATG | 3 cut(s) | 549, 657, 2072 |
| FauI | CCCGC | 2 cut(s) | 359, 1020 |
| FauNDI | CATATG | 2 cut(s) | 1984, 2298 |
| FbaI | TGATCA | 1 cut(s) | 618 |
| FblI | GTMKAC | 2 cut(s) | 1250, 1766 |
| FriOI | GRGCYC | 2 cut(s) | 174, 666 |
| FspBI | CTAG | 4 cut(s) | 44, 1737, 2037, 2344 |
| FspI | TGCGCA | 1 cut(s) | 1074 |
| GlaI | GCGC | 4 cut(s) | 98, 155, 582, 1074 |
| GsaI | CCCAGC | 3 cut(s) | 418, 800, 2306 |
| GsuI | CTGGAG | 2 cut(s) | 668, 1806 |
| HaeII | RGCGCY | 1 cut(s) | 157 |
| HaeIII | GGCC | 7 cut(s) | 473, 656, 1294, 1345, 1775, 1920, 2330 |
| HapII | CCGG | 8 cut(s) | 273, 474, 532, 610, 701, 707, 1136, 1241 |
| HgaI | GACGC | 3 cut(s) | 134, 466, 587 |
| HhaI | GCGC | 4 cut(s) | 99, 156, 583, 1075 |
| Hin1I | GRCGYC | 2 cut(s) | 126, 477 |
| Hin1II | CATG | 3 cut(s) | 553, 661, 2076 |
| Hin6I | GCGC | 4 cut(s) | 97, 154, 581, 1073 |
| HinP1I | GCGC | 4 cut(s) | 97, 154, 581, 1073 |
| HincII | GTYRAC | 1 cut(s) | 397 |
| HindII | GTYRAC | 1 cut(s) | 397 |
| HinfI | GANTC | 4 cut(s) | 613, 752, 1162, 1880 |
| HpaII | CCGG | 8 cut(s) | 273, 474, 532, 610, 701, 707, 1136, 1241 |
| Hpy166II | GTNNAC | 6 cut(s) | 397, 634, 1026, 1237, 1251, 1767 |
| Hpy188I | TCNGA | 9 cut(s) | 439, 600, 618, 726, 751, 757, 1873, 1947, 2198 |
| Hpy188III | TCNNGA | 3 cut(s) | 514, 524, 2130 |
| Hpy8I | GTNNAC | 6 cut(s) | 397, 634, 1026, 1237, 1251, 1767 |
| Hpy99I | CGWCG | 3 cut(s) | 482, 581, 604 |
| HpyCH4III | ACNGT | 4 cut(s) | 394, 1030, 2100, 2267 |
| HpyCH4IV | ACGT | 1 cut(s) | 1142 |
| HpyCH4V | TGCA | 7 cut(s) | 1493, 1570, 1898, 1988, 2072, 2186, 2225 |
| HpySE526I | ACGT | 1 cut(s) | 1142 |
| Hsp92I | GRCGYC | 2 cut(s) | 126, 477 |
| Hsp92II | CATG | 3 cut(s) | 553, 661, 2076 |
| HspAI | GCGC | 4 cut(s) | 97, 154, 581, 1073 |
| KroI | GCCGGC | 1 cut(s) | 473 |
| KroNI | GCCGGC | 1 cut(s) | 475 |
| Ksp22I | TGATCA | 1 cut(s) | 618 |
| Kzo9I | GATC | 3 cut(s) | 618, 1423, 2241 |
| Lsp1109I | GCAGC | 9 cut(s) | 577, 1699, 1703, 1783, 1804, 1813, 2056, 2170, 2209 |
| LweI | GCATC | 4 cut(s) | 174, 1176, 1291, 1480 |
| MaeI | CTAG | 4 cut(s) | 44, 1737, 2037, 2344 |
| MaeII | ACGT | 1 cut(s) | 1142 |
| MaeIII | GTNAC | 3 cut(s) | 493, 1130, 1725 |
| MalI | GATC | 3 cut(s) | 620, 1425, 2243 |
| MbiI | CCGCTC | 1 cut(s) | 266 |
| MboI | GATC | 3 cut(s) | 618, 1423, 2241 |
| MhlI | GDGCHC | 2 cut(s) | 174, 666 |
| MluCI | AATT | 8 cut(s) | 745, 1033, 1156, 1348, 1499, 1553, 1616, 2143 |
| MmeI | TCCRAC | 7 cut(s) | 214, 393, 462, 623, 918, 1515, 2047 |
| Mph1103I | ATGCAT | 1 cut(s) | 1990 |
| MroNI | GCCGGC | 1 cut(s) | 473 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2058 |
| MseI | TTAA | 8 cut(s) | 588, 1047, 1086, 1152, 1386, 1515, 1991, 2324 |
| MspA1I | CMGCKG | 2 cut(s) | 1826, 2247 |
| MspI | CCGG | 8 cut(s) | 273, 474, 532, 610, 701, 707, 1136, 1241 |
| MspR9I | CCNGG | 4 cut(s) | 470, 707, 1136, 1241 |
| Mva1269I | GAATGC | 2 cut(s) | 919, 1006 |
| MvaI | CCWGG | 1 cut(s) | 470 |
| MvnI | CGCG | 1 cut(s) | 581 |
| NaeI | GCCGGC | 1 cut(s) | 475 |
| NciI | CCSGG | 3 cut(s) | 707, 1136, 1241 |
| NcoI | CCATGG | 2 cut(s) | 549, 657 |
| NdeI | CATATG | 2 cut(s) | 1984, 2298 |
| NdeII | GATC | 3 cut(s) | 618, 1423, 2241 |
| NgoMIV | GCCGGC | 1 cut(s) | 473 |
| NlaIII | CATG | 3 cut(s) | 553, 661, 2076 |
| NlaIV | GGNNCC | 4 cut(s) | 705, 2173, 2308, 2331 |
| NmeAIII | GCCGAG | 3 cut(s) | 1041, 1820, 1907 |
| NmuCI | GTSAC | 2 cut(s) | 493, 1130 |
| NsbI | TGCGCA | 1 cut(s) | 1074 |
| NsiI | ATGCAT | 1 cut(s) | 1990 |
| NspI | RCATGY | 1 cut(s) | 2076 |
| NspV | TTCGAA | 1 cut(s) | 899 |
| PceI | AGGCCT | 1 cut(s) | 1294 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 117, 132, 1730 |
| PctI | GAATGC | 2 cut(s) | 919, 1006 |
| PdiI | GCCGGC | 1 cut(s) | 475 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2058 |
| PfeI | GAWTC | 4 cut(s) | 613, 752, 1162, 1880 |
| PflFI | GACNNNGTC | 1 cut(s) | 1762 |
| PsiI | TTATAA | 1 cut(s) | 1472 |
| Psp124BI | GAGCTC | 1 cut(s) | 666 |
| Psp6I | CCWGG | 1 cut(s) | 468 |
| PspFI | CCCAGC | 3 cut(s) | 414, 796, 2302 |
| PspGI | CCWGG | 1 cut(s) | 468 |
| PspN4I | GGNNCC | 4 cut(s) | 705, 2173, 2308, 2331 |
| PspPI | GGNCC | 3 cut(s) | 654, 703, 2329 |
| PstI | CTGCAG | 1 cut(s) | 2227 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1808, 1829 |
| PsyI | GACNNNGTC | 1 cut(s) | 1762 |
| PvuII | CAGCTG | 1 cut(s) | 1826 |
| RsaI | GTAC | 1 cut(s) | 434 |
| RsaNI | GTAC | 1 cut(s) | 433 |
| SacI | GAGCTC | 1 cut(s) | 666 |
| SaqAI | TTAA | 8 cut(s) | 588, 1047, 1086, 1152, 1386, 1515, 1991, 2324 |
| Sau3AI | GATC | 3 cut(s) | 618, 1423, 2241 |
| Sau96I | GGNCC | 3 cut(s) | 654, 703, 2329 |
| ScaI | AGTACT | 1 cut(s) | 434 |
| ScrFI | CCNGG | 4 cut(s) | 470, 707, 1136, 1241 |
| SduI | GDGCHC | 2 cut(s) | 174, 666 |
| SfaNI | GCATC | 4 cut(s) | 174, 1176, 1291, 1480 |
| SfcI | CTRYAG | 2 cut(s) | 1767, 2223 |
| SfuI | TTCGAA | 1 cut(s) | 899 |
| SinI | GGWCC | 1 cut(s) | 703 |
| SmlI | CTYRAG | 1 cut(s) | 665 |
| SmoI | CTYRAG | 1 cut(s) | 665 |
| Sse9I | AATT | 8 cut(s) | 745, 1033, 1156, 1348, 1499, 1553, 1616, 2143 |
| SseBI | AGGCCT | 1 cut(s) | 1294 |
| SspMI | CTAG | 4 cut(s) | 44, 1737, 2037, 2344 |
| SstI | GAGCTC | 1 cut(s) | 666 |
| StuI | AGGCCT | 1 cut(s) | 1294 |
| StyD4I | CCNGG | 4 cut(s) | 468, 705, 1134, 1239 |
| StyI | CCWWGG | 3 cut(s) | 549, 657, 1962 |
| TaaI | ACNGT | 4 cut(s) | 394, 1030, 2100, 2267 |
| TaiI | ACGT | 1 cut(s) | 1145 |
| TaqI | TCGA | 6 cut(s) | 168, 330, 525, 696, 899, 2131 |
| TasI | AATT | 8 cut(s) | 745, 1033, 1156, 1348, 1499, 1553, 1616, 2143 |
| TatI | WGTACW | 1 cut(s) | 432 |
| TfiI | GAWTC | 4 cut(s) | 613, 752, 1162, 1880 |
| Tru1I | TTAA | 8 cut(s) | 588, 1047, 1086, 1152, 1386, 1515, 1991, 2324 |
| Tru9I | TTAA | 8 cut(s) | 588, 1047, 1086, 1152, 1386, 1515, 1991, 2324 |
| TscAI | CASTG | 2 cut(s) | 1783, 2130 |
| TseFI | GTSAC | 2 cut(s) | 493, 1130 |
| TseI | GCWGC | 9 cut(s) | 565, 1691, 1712, 1796, 1817, 1826, 2069, 2183, 2222 |
| Tsp45I | GTSAC | 2 cut(s) | 493, 1130 |
| TspGWI | ACGGA | 2 cut(s) | 391, 1722 |
| TspRI | CASTG | 2 cut(s) | 1783, 2130 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1762 |
| VpaK11BI | GGWCC | 1 cut(s) | 703 |
| XapI | RAATTY | 5 cut(s) | 745, 1033, 1348, 1499, 2143 |
| XceI | RCATGY | 1 cut(s) | 2076 |
| XmiI | GTMKAC | 2 cut(s) | 1250, 1766 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2058 |
| XspI | CTAG | 4 cut(s) | 44, 1737, 2037, 2344 |
| ZrmI | AGTACT | 1 cut(s) | 434 |
| Zsp2I | ATGCAT | 1 cut(s) | 1990 |