Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002595.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

12543 .. 12965

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002595.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggatgaggctattaaggttatggatgagatggaggataacggggttggcgccaatgaggttacctatggggttgtcattgaagcttattgtaaggagaagaagtcgggcgaagcgattaatttgcttagtgatatggtcgagaagaggtatataccgagctcggtgctctgttgtaaggtgattgatgttttgtgttgcaaaggaaaggtggaggatgcttgtgaactgtggaagaggcttttgaagaagaattgcaagccggccaggaaattgtttgatcagtttgagacgagtgagcccccggatgtcatgacttacaacgtgcttatttctggaatgtgtgaagtgggggagatgtgtgaggcagggaggttgtgggatgacatggtggagaagggatgtgatcaaaggattctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

140

Amino Acids

15.8

Weight (kDa)

4.69

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	83, 247
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	2 cut(s)	86, 162
AluI	AGCT	2 cut(s)	86, 162
Alw21I	GWGCWC	2 cut(s)	164, 171
Alw26I	GTCTC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	264
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	53
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	2 cut(s)	164, 303
Bbv12I	GWGCWC	2 cut(s)	164, 171
BccI	CCATC	1 cut(s)	25
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 148, 182
BciT130I	CCWGG	1 cut(s)	268
BclI	TGATCA	2 cut(s)	280, 406
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	284
BfoI	RGCGCY	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	268, 305
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	268, 305
BmsI	GCATC	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	303
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse118I	RCCGGY	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	6 cut(s)	10, 31, 223, 313, 388, 407
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	164, 171
BsiSI	CCGG	2 cut(s)	263, 305
BsmAI	GTCTC	1 cut(s)	284
BsmBI	CGTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	266
Bsp1286I	GDGCHC	3 cut(s)	164, 171, 303
Bsp143I	GATC	2 cut(s)	280, 406
BspANI	GGCC	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	2 cut(s)	280, 406
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	2 cut(s)	140, 230
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	260, 264
BstDEI	CTNAG	1 cut(s)	128
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	6 cut(s)	10, 31, 223, 313, 388, 407
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	283, 409
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	280, 406
BstNI	CCWGG	1 cut(s)	268
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	266, 303
BsuRI	GGCC	1 cut(s)	266
BtsCI	GGATG	6 cut(s)	10, 31, 223, 313, 388, 407
Cac8I	GCNNGC	2 cut(s)	260, 264
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	53
Cfr10I	RCCGGY	1 cut(s)	262
CviAII	CATG	2 cut(s)	313, 388
CviJI	RGCY	7 cut(s)	11, 86, 162, 241, 262, 266, 301
CviKI_1	RGCY	7 cut(s)	11, 86, 162, 241, 262, 266, 301
DdeI	CTNAG	1 cut(s)	128
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	2 cut(s)	282, 408
DpnII	GATC	2 cut(s)	280, 406
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	140, 230
EarI	CTCTTC	2 cut(s)	140, 230
Ecl136II	GAGCTC	1 cut(s)	162
Eco24I	GRGCYC	2 cut(s)	164, 303
Eco53kI	GAGCTC	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	164, 303
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	2 cut(s)	316, 391
FaiI	YATR	7 cut(s)	23, 69, 137, 153, 155, 314, 389
FatI	CATG	2 cut(s)	312, 387
FbaI	TGATCA	2 cut(s)	280, 406
FokI	GGATG	6 cut(s)	17, 38, 230, 320, 395, 414
FriOI	GRGCYC	2 cut(s)	164, 303
GlaI	GCGC	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	263, 305
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	316, 391
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	2 cut(s)	263, 305
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188III	TCNNGA	3 cut(s)	142, 313, 336
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	201, 258
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	316, 391
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Ksp22I	TGATCA	2 cut(s)	280, 406
Kzo9I	GATC	2 cut(s)	280, 406
LpnPI	CCDG	6 cut(s)	253, 276, 280, 318, 321, 354
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	282, 408
MboI	GATC	2 cut(s)	280, 406
MboII	GAAGA	5 cut(s)	112, 157, 247, 259, 262
MhlI	GDGCHC	3 cut(s)	164, 171, 303
MluCI	AATT	3 cut(s)	121, 253, 272
Mly113I	GGCGCC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	28, 52, 141, 208, 231, 358, 366
MroNI	GCCGGC	1 cut(s)	262
MseI	TTAA	2 cut(s)	15, 120
MspI	CCGG	2 cut(s)	263, 305
MspR9I	CCNGG	2 cut(s)	268, 305
MvaI	CCWGG	1 cut(s)	268
NaeI	GCCGGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	2 cut(s)	280, 406
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	2 cut(s)	316, 391
NlaIV	GGNNCC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	15, 120
Sau3AI	GATC	2 cut(s)	280, 406
ScrFI	CCNGG	2 cut(s)	268, 305
SduI	GDGCHC	3 cut(s)	164, 171, 303
SfaNI	GCATC	1 cut(s)	208
SfoI	GGCGCC	1 cut(s)	52
Sse9I	AATT	3 cut(s)	121, 253, 272
SspDI	GGCGCC	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	266, 303
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	141
TasI	AATT	3 cut(s)	121, 253, 272
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	15, 120
Tru9I	TTAA	2 cut(s)	15, 120
VspI	ATTAAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.