Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

32214653 .. 32225121

Gene Structure 10469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGCTGCTCCGCAGGAACCTCTCCCCCAAACCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCTCTTCTCCACCTCCGCCGCCGTCGATTTCCTCCACTCCTACACCGTCACCCCTCCGATCCAAGACTGGCCCCATCGCCTCTCCCCAAAGCGCCTCATCTCCCTCATCACCCGCGAGCCCAAACTCGACCTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGGATTTCACCATAATTACCACACCTACCACGCCATCATCCGCCGCCTCCTCCGCTCCCGCGCTTTTCACCTCATCGACCCCCTCCTCTCCGACCTCCGCGCCTCCAATCTCCGATGCAGCGAAGACCTCTTCATCTCCCTAATCCGCAATTACGGCGTCGTTTCACGCCCTAAACTCGCCTTCAAGACATTTATCACCATTCCGAAATTCGGCGCCCAACGATCCGTGAGGTCCTTGAATGCGTTGCTGAACGCTTTGGTTCAGAATCAAGAGTATAGATTGGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGGTTCGGGGTGGCGCCGAATGTGTTTAGTTGTAATATATTGATCAAAGCACTGTGTAAGAGAAATGATTTGGAGACTGCACACCAGGTGCTCGATGAAATGCCTGCGATGGGATTTGTGCCCAATGTGGTGACTTTTACTACCATTTTGGGTGGTTATGTTTCGCGGCGCGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATGTGACTACATATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGGGGTTGGCGCCAATGAGGTCACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGAAGTCGGGTGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACTCCGGATAATGCAGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAATGTGGGAAGCCAGGAAATTGTTTGATCAGATTGAGATGAGTGAGCCTCCGGATGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTGAGGCTGGGAGGTTGTGGGATGACATGGTGGAGAAAGGATGTTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGATGAGATGTTCGAAAAAGGCTGTTTGCCAAACAAGTCTACTTATGCTATGTTGATCGAGGGGCTCTGTGACTCAGGAGAGGAAGCTGAAATCACTAGAGTAATATCTATGGCAATGTCAAGTGGAGACATGGACAGTGATTCCTGGGATCTTTTCCTTACTAAGGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAAACAGAATACTACTGGAGAATGCTGATTCGAGCCCCAGATTTAGAGGCCTTGGAATATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

544

Amino Acids

61.43

Weight (kDa)

6.88

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	176 - 237	9.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	185 - 216	3e-08	PPR repeat
PPR_2	PF13041	188 - 236	1e-14	PPR repeat family
PPR_2	PF13041	223 - 272	5.7e-13	PPR repeat family
PPR_3	PF13812	247 - 307	6.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	255 - 287	5.4e-09	PPR repeat
PPR_2	PF13041	258 - 307	2.4e-16	PPR repeat family
PPR	PF01535	262 - 291	3e-08	PPR repeat
PPR_1	PF12854	290 - 322	2.5e-06	PPR repeat
PPR_2	PF13041	294 - 330	5.1e-07	PPR repeat family
PPR	PF01535	296 - 325	2.4e-06	PPR repeat
PPR_1	PF12854	397 - 426	9.2e-08	PPR repeat
PPR_2	PF13041	397 - 446	2.3e-20	PPR repeat family
PPR_3	PF13812	397 - 444	2.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	428 - 460	1.4e-11	PPR repeat
PPR_2	PF13041	435 - 481	1.4e-14	PPR repeat family
PPR	PF01535	435 - 465	8.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	446, 559, 728, 875
AccBSI	CCGCTC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	1409
AccII	CGCG	5 cut(s)	177, 294, 333, 712, 717
AccIII	TCCGGA	2 cut(s)	1087, 1189
AclWI	GGATC	3 cut(s)	115, 450, 1527
AcsI	RAATTY	2 cut(s)	440, 1297
AcyI	GRCGYC	4 cut(s)	390, 447, 560, 876
AdeI	CACNNNGTG	2 cut(s)	526, 634
AfiI	CCNNNNNNNGG	3 cut(s)	443, 656, 1534
AgsI	TTSAA	4 cut(s)	418, 472, 908, 1072
AjnI	CCWGG	3 cut(s)	630, 1151, 1514
AloI	GAACNNNNNNTCC	2 cut(s)	1364, 1396
AluBI	AGCT	4 cut(s)	826, 911, 987, 1457
AluI	AGCT	4 cut(s)	826, 911, 987, 1457
Alw21I	GWGCWC	2 cut(s)	639, 989
Alw26I	GTCTC	2 cut(s)	614, 1491
AlwI	GGATC	3 cut(s)	115, 450, 1527
Aor13HI	TCCGGA	2 cut(s)	1087, 1189
AoxI	GGCC	2 cut(s)	131, 1618
ApeKI	GCWGC	2 cut(s)	4, 351
ApoI	RAATTY	2 cut(s)	440, 1297
Asp700I	GAANNNNTTC	1 cut(s)	1566
AspLEI	GCGC	8 cut(s)	156, 296, 335, 449, 562, 717, 878, 994
AspS9I	GGNCC	2 cut(s)	132, 465
AsuC2I	CCSGG	1 cut(s)	234
AsuII	TTCGAA	1 cut(s)	1383
AvaII	GGWCC	1 cut(s)	465
BaeGI	GKGCMC	2 cut(s)	669, 1109
BanI	GGYRCC	4 cut(s)	446, 559, 728, 875
BanII	GRGCYC	4 cut(s)	183, 989, 1437, 1607
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	639, 989
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	6 cut(s)	144, 275, 649, 793, 797, 850
BceAI	ACGGC	3 cut(s)	44, 68, 403
BciT130I	CCWGG	3 cut(s)	632, 1153, 1516
BciVI	GTATCC	1 cut(s)	1546
BclI	TGATCA	3 cut(s)	588, 1165, 1320
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	614, 1491
BfaI	CTAG	1 cut(s)	1467
BfmI	CTRYAG	1 cut(s)	538
BfoI	RGCGCY	5 cut(s)	157, 450, 563, 879, 995
BfuI	GTATCC	1 cut(s)	1546
BisI	GCNGC	5 cut(s)	5, 81, 277, 352, 713
BlsI	GCNGC	5 cut(s)	6, 82, 278, 353, 714
Bme1390I	CCNGG	4 cut(s)	234, 632, 1153, 1516
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	132, 465
BmiI	GGNNCC	6 cut(s)	17, 134, 448, 561, 730, 877
BmrFI	CCNGG	4 cut(s)	234, 632, 1153, 1516
BmrI	ACTGGG	1 cut(s)	1566
BmsI	GCATC	2 cut(s)	338, 1033
BmuI	ACTGGG	1 cut(s)	1566
BpiI	GAAGAC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	1171, 1203
BpmI	CTGGAG	1 cut(s)	1607
Bpu14I	TTCGAA	1 cut(s)	1383
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	4 cut(s)	390, 447, 560, 876
BsaJI	CCNNGG	3 cut(s)	232, 1515, 1621
BsaWI	WCCGGW	2 cut(s)	1087, 1189
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 959, 989
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 656, 1534
Bse1I	ACTGG	4 cut(s)	134, 1124, 1561, 1590
Bse3DI	GCAATG	1 cut(s)	1491
BseAI	TCCGGA	2 cut(s)	1087, 1189
BseBI	CCWGG	3 cut(s)	632, 1153, 1516
BseDI	CCNNGG	3 cut(s)	232, 1515, 1621
BseGI	GGATG	8 cut(s)	270, 808, 856, 1048, 1198, 1273, 1292, 1378
BseLI	CCNNNNNNNGG	3 cut(s)	443, 656, 1534
BseMI	GCAATG	1 cut(s)	1491
BseMII	CTCAG	1 cut(s)	1458
BseNI	ACTGG	4 cut(s)	134, 1124, 1561, 1590
BseRI	GAGGAG	3 cut(s)	32, 272, 308
BseSI	GKGCMC	2 cut(s)	669, 1109
BseXI	GCAGC	1 cut(s)	363
BseYI	CCCAGC	1 cut(s)	1253
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	5 cut(s)	177, 294, 333, 712, 717
BshFI	GGCC	2 cut(s)	133, 1620
BshNI	GGYRCC	4 cut(s)	446, 559, 728, 875
BsiHKAI	GWGCWC	2 cut(s)	639, 989
BsiSI	CCGG	3 cut(s)	234, 1088, 1190
BslI	CCNNNNNNNGG	3 cut(s)	443, 656, 1534
BsmAI	GTCTC	2 cut(s)	614, 1491
BsmI	GAATGC	2 cut(s)	478, 1597
BsnI	GGCC	2 cut(s)	133, 1620
Bsp119I	TTCGAA	1 cut(s)	1383
Bsp1286I	GDGCHC	7 cut(s)	183, 639, 669, 989, 1109, 1437, 1607
Bsp13I	TCCGGA	2 cut(s)	1087, 1189
Bsp143I	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
BspANI	GGCC	2 cut(s)	133, 1620
BspCNI	CTCAG	1 cut(s)	1457
BspEI	TCCGGA	2 cut(s)	1087, 1189
BspFNI	CGCG	5 cut(s)	177, 294, 333, 712, 717
BspHI	TCATGA	1 cut(s)	1197
BspLI	GGNNCC	6 cut(s)	17, 134, 448, 561, 730, 877
BspPI	GGATC	3 cut(s)	115, 450, 1527
BspT104I	TTCGAA	1 cut(s)	1383
BspT107I	GGYRCC	4 cut(s)	446, 559, 728, 875
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	1491
BsrI	ACTGG	4 cut(s)	134, 1124, 1561, 1590
BssECI	CCNNGG	3 cut(s)	232, 1515, 1621
BssMI	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
BssNI	GRCGYC	4 cut(s)	390, 447, 560, 876
BssT1I	CCWWGG	1 cut(s)	1621
Bst2UI	CCWGG	3 cut(s)	632, 1153, 1516
Bst4CI	ACNGT	5 cut(s)	109, 539, 600, 1056, 1508
Bst6I	CTCTTC	4 cut(s)	71, 368, 965, 1055
BstACI	GRCGYC	4 cut(s)	390, 447, 560, 876
BstBI	TTCGAA	1 cut(s)	1383
BstC8I	GCNNGC	3 cut(s)	179, 651, 1109
BstDEI	CTNAG	2 cut(s)	1444, 1533
BstENI	CCTNNNNNAGG	1 cut(s)	1532
BstF5I	GGATG	8 cut(s)	270, 808, 856, 1048, 1198, 1273, 1292, 1378
BstFNI	CGCG	5 cut(s)	177, 294, 333, 712, 717
BstH2I	RGCGCY	5 cut(s)	157, 450, 563, 879, 995
BstHHI	GCGC	8 cut(s)	156, 296, 335, 449, 562, 717, 878, 994
BstKTI	GATC	7 cut(s)	123, 458, 591, 1168, 1323, 1428, 1522
BstMAI	GTCTC	2 cut(s)	614, 1491
BstMBI	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 387, 823
BstNI	CCWGG	3 cut(s)	632, 1153, 1516
BstSCI	CCNGG	4 cut(s)	232, 630, 1151, 1514
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	2 cut(s)	669, 1109
BstUI	CGCG	5 cut(s)	177, 294, 333, 712, 717
BstV1I	GCAGC	1 cut(s)	363
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	1519
BstYI	RGATCY	1 cut(s)	1519
BsuI	GTATCC	1 cut(s)	1546
BsuRI	GGCC	2 cut(s)	133, 1620
BtgZI	GCGATG	2 cut(s)	122, 668
BtsCI	GGATG	8 cut(s)	270, 808, 856, 1048, 1198, 1273, 1292, 1378
BtsIMutI	CAGTG	2 cut(s)	596, 1513
Cac8I	GCNNGC	3 cut(s)	179, 651, 1109
CciI	TCATGA	1 cut(s)	1197
CfoI	GCGC	8 cut(s)	156, 296, 335, 449, 562, 717, 878, 994
Cfr13I	GGNCC	2 cut(s)	132, 465
CseI	GACGC	1 cut(s)	379
CsiI	ACCWGGT	1 cut(s)	630
CviAII	CATG	3 cut(s)	1198, 1273, 1501
DdeI	CTNAG	2 cut(s)	1444, 1533
DinI	GGCGCC	3 cut(s)	448, 561, 877
DpnI	GATC	7 cut(s)	122, 457, 590, 1167, 1322, 1427, 1521
DpnII	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
DraIII	CACNNNGTG	2 cut(s)	526, 634
Eam1104I	CTCTTC	4 cut(s)	71, 368, 965, 1055
EarI	CTCTTC	4 cut(s)	71, 368, 965, 1055
EciI	GGCGGA	2 cut(s)	67, 263
Ecl136II	GAGCTC	1 cut(s)	987
Eco130I	CCWWGG	1 cut(s)	1621
Eco147I	AGGCCT	1 cut(s)	1620
Eco24I	GRGCYC	4 cut(s)	183, 989, 1437, 1607
Eco47I	GGWCC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	987
EcoNI	CCTNNNNNAGG	1 cut(s)	1532
EcoO109I	RGGNCCY	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	1297
EcoRII	CCWGG	3 cut(s)	630, 1151, 1514
EcoT14I	CCWWGG	1 cut(s)	1621
EcoT38I	GRGCYC	4 cut(s)	183, 989, 1437, 1607
EgeI	GGCGCC	3 cut(s)	448, 561, 877
EheI	GGCGCC	3 cut(s)	448, 561, 877
ErhI	CCWWGG	1 cut(s)	1621
FaeI	CATG	3 cut(s)	1201, 1276, 1504
FatI	CATG	3 cut(s)	1197, 1272, 1500
FauI	CCCGC	2 cut(s)	182, 299
FbaI	TGATCA	3 cut(s)	588, 1165, 1320
FblI	GTMKAC	1 cut(s)	1409
Fnu4HI	GCNGC	5 cut(s)	5, 81, 277, 352, 713
FokI	GGATG	8 cut(s)	257, 815, 863, 1055, 1205, 1280, 1299, 1385
FriOI	GRGCYC	4 cut(s)	183, 989, 1437, 1607
Fsp4HI	GCNGC	5 cut(s)	5, 81, 277, 352, 713
FspBI	CTAG	1 cut(s)	1467
GlaI	GCGC	8 cut(s)	155, 295, 334, 448, 561, 716, 877, 993
GluI	GCNGC	5 cut(s)	5, 81, 277, 352, 713
GsaI	CCCAGC	1 cut(s)	1257
GsuI	CTGGAG	1 cut(s)	1607
HaeII	RGCGCY	5 cut(s)	157, 450, 563, 879, 995
HaeIII	GGCC	2 cut(s)	133, 1620
HapII	CCGG	3 cut(s)	234, 1088, 1190
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	8 cut(s)	156, 296, 335, 449, 562, 717, 878, 994
Hin1I	GRCGYC	4 cut(s)	390, 447, 560, 876
Hin1II	CATG	3 cut(s)	1201, 1276, 1504
Hin6I	GCGC	8 cut(s)	154, 294, 333, 447, 560, 715, 876, 992
HinP1I	GCGC	8 cut(s)	154, 294, 333, 447, 560, 715, 876, 992
HindIII	AAGCTT	1 cut(s)	909
HinfI	GANTC	5 cut(s)	499, 1329, 1442, 1511, 1598
HpaII	CCGG	3 cut(s)	234, 1088, 1190
Hpy166II	GTNNAC	3 cut(s)	520, 1052, 1410
Hpy188I	TCNGA	8 cut(s)	120, 325, 347, 438, 498, 534, 1170, 1296
Hpy188III	TCNNGA	8 cut(s)	418, 503, 773, 1088, 1190, 1198, 1221, 1446
Hpy8I	GTNNAC	3 cut(s)	520, 1052, 1410
Hpy99I	CGWCG	2 cut(s)	89, 395
HpyAV	CCTTC	6 cut(s)	43, 424, 1022, 1027, 1126, 1345
HpyCH4III	ACNGT	5 cut(s)	109, 539, 600, 1056, 1508
HpyCH4IV	ACGT	1 cut(s)	1209
HpyCH4V	TGCA	4 cut(s)	351, 626, 1083, 1097
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 387, 823
HpyF3I	CTNAG	2 cut(s)	1444, 1533
HpySE526I	ACGT	1 cut(s)	1209
Hsp92I	GRCGYC	4 cut(s)	390, 447, 560, 876
Hsp92II	CATG	3 cut(s)	1201, 1276, 1504
HspAI	GCGC	8 cut(s)	154, 294, 333, 447, 560, 715, 876, 992
KasI	GGCGCC	3 cut(s)	446, 559, 875
Kpn2I	TCCGGA	2 cut(s)	1087, 1189
Ksp22I	TGATCA	3 cut(s)	588, 1165, 1320
Kzo9I	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
LmnI	GCTCC	2 cut(s)	12, 293
Lsp1109I	GCAGC	1 cut(s)	363
LweI	GCATC	2 cut(s)	338, 1033
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	1 cut(s)	1467
MaeII	ACGT	1 cut(s)	1209
MaeIII	GTNAC	5 cut(s)	109, 676, 778, 886, 1439
MalI	GATC	7 cut(s)	122, 457, 590, 1167, 1322, 1427, 1521
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
MboII	GAAGA	8 cut(s)	58, 199, 355, 368, 982, 1072, 1084, 1087
MflI	RGATCY	1 cut(s)	1519
MhlI	GDGCHC	7 cut(s)	183, 639, 669, 989, 1109, 1437, 1607
MluCI	AATT	8 cut(s)	247, 382, 440, 946, 1078, 1157, 1297, 1359
Mly113I	GGCGCC	3 cut(s)	447, 560, 876
MlyI	GAGTC	1 cut(s)	1436
MmeI	TCCRAC	1 cut(s)	348
MroI	TCCGGA	2 cut(s)	1087, 1189
MroXI	GAANNNNTTC	1 cut(s)	1566
MseI	TTAA	2 cut(s)	840, 945
MspI	CCGG	3 cut(s)	234, 1088, 1190
MspR9I	CCNGG	4 cut(s)	234, 632, 1153, 1516
Mva1269I	GAATGC	2 cut(s)	478, 1597
MvaI	CCWGG	3 cut(s)	632, 1153, 1516
MvnI	CGCG	5 cut(s)	177, 294, 333, 712, 717
MwoI	GCNNNNNNNGC	3 cut(s)	285, 387, 823
NarI	GGCGCC	3 cut(s)	447, 560, 876
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
NlaIII	CATG	3 cut(s)	1201, 1276, 1504
NlaIV	GGNNCC	6 cut(s)	17, 134, 448, 561, 730, 877
NmeAIII	GCCGAG	1 cut(s)	968
NmuCI	GTSAC	5 cut(s)	109, 676, 778, 886, 1439
NspV	TTCGAA	1 cut(s)	1383
PagI	TCATGA	1 cut(s)	1197
PceI	AGGCCT	1 cut(s)	1620
PctI	GAATGC	2 cut(s)	478, 1597
PdmI	GAANNNNTTC	1 cut(s)	1566
PfeI	GAWTC	4 cut(s)	499, 1329, 1511, 1598
PkrI	GCNGC	5 cut(s)	6, 82, 278, 353, 714
PleI	GAGTC	1 cut(s)	1436
PluTI	GGCGCC	3 cut(s)	450, 563, 879
PpsI	GAGTC	1 cut(s)	1436
PpuMI	RGGWCCY	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	989
Psp5II	RGGWCCY	1 cut(s)	465
Psp6I	CCWGG	3 cut(s)	630, 1151, 1514
PspFI	CCCAGC	1 cut(s)	1253
PspGI	CCWGG	3 cut(s)	630, 1151, 1514
PspN4I	GGNNCC	6 cut(s)	17, 134, 448, 561, 730, 877
PspPI	GGNCC	2 cut(s)	132, 465
PspPPI	RGGWCCY	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	1519
SacI	GAGCTC	1 cut(s)	989
SaqAI	TTAA	2 cut(s)	840, 945
SatI	GCNGC	5 cut(s)	5, 81, 277, 352, 713
Sau3AI	GATC	7 cut(s)	120, 455, 588, 1165, 1320, 1425, 1519
Sau96I	GGNCC	2 cut(s)	132, 465
SchI	GAGTC	1 cut(s)	1436
ScrFI	CCNGG	4 cut(s)	234, 632, 1153, 1516
SduI	GDGCHC	7 cut(s)	183, 639, 669, 989, 1109, 1437, 1607
SexAI	ACCWGGT	1 cut(s)	630
SfaNI	GCATC	2 cut(s)	338, 1033
SfcI	CTRYAG	1 cut(s)	538
SfoI	GGCGCC	3 cut(s)	448, 561, 877
SfuI	TTCGAA	1 cut(s)	1383
SinI	GGWCC	1 cut(s)	465
Sse9I	AATT	8 cut(s)	247, 382, 440, 946, 1078, 1157, 1297, 1359
SseBI	AGGCCT	1 cut(s)	1620
SspDI	GGCGCC	3 cut(s)	446, 559, 875
SspMI	CTAG	1 cut(s)	1467
SstI	GAGCTC	1 cut(s)	989
StuI	AGGCCT	1 cut(s)	1620
StyD4I	CCNGG	4 cut(s)	232, 630, 1151, 1514
StyI	CCWWGG	1 cut(s)	1621
TaaI	ACNGT	5 cut(s)	109, 539, 600, 1056, 1508
TaiI	ACGT	1 cut(s)	1212
TaqI	TCGA	7 cut(s)	87, 189, 309, 639, 1383, 1428, 1601
TasI	AATT	8 cut(s)	247, 382, 440, 946, 1078, 1157, 1297, 1359
TauI	GCSGC	3 cut(s)	83, 279, 715
TfiI	GAWTC	4 cut(s)	499, 1329, 1511, 1598
Tru1I	TTAA	2 cut(s)	840, 945
Tru9I	TTAA	2 cut(s)	840, 945
TscAI	CASTG	2 cut(s)	603, 1513
TseFI	GTSAC	5 cut(s)	109, 676, 778, 886, 1439
TseI	GCWGC	2 cut(s)	4, 351
Tsp45I	GTSAC	5 cut(s)	109, 676, 778, 886, 1439
TspDTI	ATGAA	2 cut(s)	355, 657
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	603, 1513
VpaK11BI	GGWCC	1 cut(s)	465
XagI	CCTNNNNNAGG	1 cut(s)	1532
XapI	RAATTY	2 cut(s)	440, 1297
XmiI	GTMKAC	1 cut(s)	1409
XmnI	GAANNNNTTC	1 cut(s)	1566
XspI	CTAG	1 cut(s)	1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.