RchiOBHm_Chr1g0340661

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
32174032 .. 32175399
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56742

Sequence Viewer

Length: 1320 bp
ATGACACATCAATATTTCCAGATATTCTCCACCTCCACCTCCACCTCCGCCGCTGCCGATTTCCTCCACTCCTACACCGTCACCCCTCCGATCCAAGACTGGCCCCACCGCCTCTCCCCAAAGTGCCTCATCTCCCTCATCACCCGCGAGCCCAAACTCGACCTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCTCGGATTCCACCATAATTACCACACCTACCACGCCATCATCCGCCTCCTCCTCCTCTCCCGCGCTTTTCACCTCATCGACCCCCTCCTCTCCGACCTCCTCGCCTCCAATCTCCGATGCAGCGAAGACCTCTTCATCTCCCTAATCAGCAATTATGGCGTCGTTTCACGCCCTAAACTCACCTTCAAGACATTTATCACCATACCGAAATTCGGCGCCCAGCGATCCGTGAGGTCCTTGAATGCGTTGCTGAACGCTTTGGTTCAGAATCACGAGTATAGATTAGTTCACTCGGTGTTTCGGAACTGTAGGGAGAGGTATGGGGTGGTGCCGAATGTGTTTAGTTGTAATATATTGATCAAAGCACTGTGTAAGAGAAATGATTTGGAGACTGCACATCAGGTGCCCGATGAAATGCCTGCGATGGGATTTGTGCCCAATGTCGTGACTTTTACTACCATTTTGGGTGGTTATGTGTCGCGGCGCGATATGGTTGGTGCCAAGAGGGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATCTGGTTGAGGCTATTAAGGTTATGGATGAGATGGAGGATAATGTGGTTGGCGCCAATGAGGTCACTTATGGGGTTATGATTGAAGGTTATTGTAAGGAAAAGAAGTCTGGTGAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACACCGGATAATGCAGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAATGTGGGAAGCCAGGAAATTGTTTGATCAGATTGAGATGAGTGAGCCTTCGGATGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTGAGGCTGGGAGGTTATGGGATGACATGGTGGAGAAAGGATGTTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTCTGTAAGATTGGAAAAGCGAAGGATGATGATTCTAATAGAAATCTTATCATGATCAACAGTTCTTGA

Protein Analysis

439

Amino Acids

49.8

Weight (kDa)

6.7

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 143 - 192 5.4e-07 PPR repeat family
PPR_3 PF13812 166 - 227 1.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 175 - 206 1.4e-06 PPR repeat
PPR_2 PF13041 178 - 226 1.5e-13 PPR repeat family
PPR_2 PF13041 268 - 304 2.2e-07 PPR repeat family
PPR_1 PF12854 268 - 296 8.2e-07 PPR repeat
PPR PF01535 270 - 299 1.2e-06 PPR repeat
PPR_1 PF12854 333 - 365 9.4e-06 PPR repeat
PPR_2 PF13041 372 - 420 9.4e-20 PPR repeat family
PPR_1 PF12854 372 - 400 1.2e-06 PPR repeat
PPR_3 PF13812 372 - 418 5.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 402 - 425 2.6e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca FvH4_7g08341 FvH4_7g08360
malus_domestica MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica Prupe.2G106500_v2.0.a1
pyrus_communis pycom02g20040
rosa_chinensis RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 416, 529, 604, 698, 797
AccII CGCG 4 cut(s) 147, 264, 682, 687
AciI CCGC 8 cut(s) 48, 51, 109, 145, 244, 262, 682, 863
AclWI GGATC 2 cut(s) 85, 420
AcsI RAATTY 2 cut(s) 410, 1219
AcyI GRCGYC 3 cut(s) 360, 417, 798
AdeI CACNNNGTG 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 413, 626
AgsI TTSAA 4 cut(s) 388, 442, 830, 994
AjnI CCWGG 1 cut(s) 1073
AluBI AGCT 1 cut(s) 909
AluI AGCT 1 cut(s) 909
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 2 cut(s) 85, 420
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 53, 321
ApoI RAATTY 2 cut(s) 410, 1219
AspLEI GCGC 5 cut(s) 266, 419, 687, 800, 916
AspS9I GGNCC 2 cut(s) 102, 435
AsuHPI GGTGA 8 cut(s) 73, 133, 263, 373, 391, 728, 869, 940
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 3 cut(s) 609, 639, 1031
BanI GGYRCC 5 cut(s) 416, 529, 604, 698, 797
BanII GRGCYC 2 cut(s) 153, 911
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 911
BbvI GCAGC 2 cut(s) 40, 333
BccI CCATC 3 cut(s) 245, 619, 772
BciT130I CCWGG 1 cut(s) 1075
BclI TGATCA 4 cut(s) 558, 1087, 1242, 1305
BcoDI GTCTC 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 3 cut(s) 420, 801, 917
BisI GCNGC 4 cut(s) 51, 54, 322, 683
BlsI GCNGC 4 cut(s) 52, 55, 323, 684
Bme1390I CCNGG 1 cut(s) 1075
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 102, 435
BmiI GGNNCC 6 cut(s) 104, 418, 531, 606, 700, 799
BmrFI CCNGG 1 cut(s) 1075
BmsI GCATC 2 cut(s) 308, 955
BpiI GAAGAC 1 cut(s) 333
BsaHI GRCGYC 3 cut(s) 360, 417, 798
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 1 cut(s) 1009
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 173, 203, 881, 911
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 626
Bse1I ACTGG 2 cut(s) 104, 1046
BseBI CCWGG 1 cut(s) 1075
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 7 cut(s) 240, 778, 970, 1120, 1195, 1214, 1282
BseLI CCNNNNNNNGG 2 cut(s) 413, 626
BseNI ACTGG 2 cut(s) 104, 1046
BseRI GAGGAG 5 cut(s) 239, 242, 245, 278, 290
BseSI GKGCMC 3 cut(s) 609, 639, 1031
BseXI GCAGC 2 cut(s) 40, 333
BseYI CCCAGC 2 cut(s) 420, 1175
BsgI GTGCAG 1 cut(s) 579
Bsh1236I CGCG 4 cut(s) 147, 264, 682, 687
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 5 cut(s) 416, 529, 604, 698, 797
BsiHKAI GWGCWC 1 cut(s) 911
BsiSI CCGG 1 cut(s) 1010
BslI CCNNNNNNNGG 2 cut(s) 413, 626
BsmAI GTCTC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 1 cut(s) 103
Bsp1286I GDGCHC 5 cut(s) 153, 609, 639, 911, 1031
Bsp143I GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
BspACI CCGC 8 cut(s) 48, 51, 109, 145, 244, 262, 682, 863
BspANI GGCC 1 cut(s) 103
BspFNI CGCG 4 cut(s) 147, 264, 682, 687
BspHI TCATGA 2 cut(s) 1119, 1302
BspLI GGNNCC 6 cut(s) 104, 418, 531, 606, 700, 799
BspPI GGATC 2 cut(s) 85, 420
BspT107I GGYRCC 5 cut(s) 416, 529, 604, 698, 797
BsrI ACTGG 2 cut(s) 104, 1046
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
BssNI GRCGYC 3 cut(s) 360, 417, 798
BssSI CACGAG 1 cut(s) 473
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 1075
Bst4CI ACNGT 5 cut(s) 79, 509, 570, 978, 1313
Bst6I CTCTTC 3 cut(s) 338, 887, 977
BstACI GRCGYC 3 cut(s) 360, 417, 798
BstC8I GCNNGC 3 cut(s) 149, 621, 1031
BstF5I GGATG 7 cut(s) 240, 778, 970, 1120, 1195, 1214, 1282
BstFNI CGCG 4 cut(s) 147, 264, 682, 687
BstH2I RGCGCY 3 cut(s) 420, 801, 917
BstHHI GCGC 5 cut(s) 266, 419, 687, 800, 916
BstKTI GATC 7 cut(s) 93, 428, 561, 748, 1090, 1245, 1308
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 1 cut(s) 1075
BstSCI CCNGG 1 cut(s) 1073
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 3 cut(s) 609, 639, 1031
BstUI CGCG 4 cut(s) 147, 264, 682, 687
BstV1I GCAGC 2 cut(s) 40, 333
BstV2I GAAGAC 1 cut(s) 333
BsuRI GGCC 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 638
BtsCI GGATG 7 cut(s) 240, 778, 970, 1120, 1195, 1214, 1282
BtsIMutI CAGTG 1 cut(s) 566
Cac8I GCNNGC 3 cut(s) 149, 621, 1031
CciI TCATGA 2 cut(s) 1119, 1302
CfoI GCGC 5 cut(s) 266, 419, 687, 800, 916
Cfr13I GGNCC 2 cut(s) 102, 435
CseI GACGC 1 cut(s) 349
CviAII CATG 3 cut(s) 1120, 1195, 1303
CviJI RGCY 9 cut(s) 103, 151, 758, 909, 988, 1045, 1073, 1108, 1175
CviKI_1 RGCY 9 cut(s) 103, 151, 758, 909, 988, 1045, 1073, 1108, 1175
DinI GGCGCC 2 cut(s) 418, 799
DpnI GATC 7 cut(s) 92, 427, 560, 747, 1089, 1244, 1307
DpnII GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
DraIII CACNNNGTG 1 cut(s) 496
Eam1104I CTCTTC 3 cut(s) 338, 887, 977
EarI CTCTTC 3 cut(s) 338, 887, 977
EciI GGCGGA 2 cut(s) 37, 233
Ecl136II GAGCTC 1 cut(s) 909
Eco24I GRGCYC 2 cut(s) 153, 911
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 909
EcoICRI GAGCTC 1 cut(s) 909
EcoO109I RGGNCCY 1 cut(s) 435
EcoRI GAATTC 1 cut(s) 1219
EcoRII CCWGG 1 cut(s) 1073
EcoT38I GRGCYC 2 cut(s) 153, 911
EgeI GGCGCC 2 cut(s) 418, 799
EheI GGCGCC 2 cut(s) 418, 799
FaeI CATG 3 cut(s) 1123, 1198, 1306
FatI CATG 3 cut(s) 1119, 1194, 1302
FauI CCCGC 2 cut(s) 152, 269
FbaI TGATCA 4 cut(s) 558, 1087, 1242, 1305
Fnu4HI GCNGC 4 cut(s) 51, 54, 322, 683
FokI GGATG 7 cut(s) 227, 785, 977, 1127, 1202, 1221, 1289
FriOI GRGCYC 2 cut(s) 153, 911
Fsp4HI GCNGC 4 cut(s) 51, 54, 322, 683
GlaI GCGC 5 cut(s) 265, 418, 686, 799, 915
GluI GCNGC 4 cut(s) 51, 54, 322, 683
GsaI CCCAGC 2 cut(s) 424, 1179
HaeII RGCGCY 3 cut(s) 420, 801, 917
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 1010
HgaI GACGC 1 cut(s) 349
HhaI GCGC 5 cut(s) 266, 419, 687, 800, 916
Hin1I GRCGYC 3 cut(s) 360, 417, 798
Hin1II CATG 3 cut(s) 1123, 1198, 1306
Hin6I GCGC 5 cut(s) 264, 417, 685, 798, 914
HinP1I GCGC 5 cut(s) 264, 417, 685, 798, 914
HinfI GANTC 4 cut(s) 207, 469, 1251, 1283
HpaII CCGG 1 cut(s) 1010
HphI GGTGA 8 cut(s) 73, 133, 263, 373, 391, 728, 869, 940
Hpy166II GTNNAC 2 cut(s) 490, 974
Hpy188I TCNGA 9 cut(s) 90, 206, 295, 317, 468, 504, 1092, 1114, 1218
Hpy188III TCNNGA 9 cut(s) 19, 388, 473, 646, 743, 1120, 1143, 1303, 1317
Hpy8I GTNNAC 2 cut(s) 490, 974
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 7 cut(s) 394, 824, 944, 949, 1048, 1119, 1267
HpyCH4III ACNGT 5 cut(s) 79, 509, 570, 978, 1313
HpyCH4IV ACGT 1 cut(s) 1131
HpyCH4V TGCA 4 cut(s) 321, 596, 1005, 1019
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 1131
Hsp92I GRCGYC 3 cut(s) 360, 417, 798
Hsp92II CATG 3 cut(s) 1123, 1198, 1306
HspAI GCGC 5 cut(s) 264, 417, 685, 798, 914
KasI GGCGCC 2 cut(s) 416, 797
Ksp22I TGATCA 4 cut(s) 558, 1087, 1242, 1305
Kzo9I GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
Lsp1109I GCAGC 2 cut(s) 40, 333
LweI GCATC 2 cut(s) 308, 955
MaeII ACGT 1 cut(s) 1131
MaeIII GTNAC 3 cut(s) 79, 646, 808
MalI GATC 7 cut(s) 92, 427, 560, 747, 1089, 1244, 1307
MboI GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
MboII GAAGA 7 cut(s) 169, 325, 338, 904, 994, 1006, 1009
MhlI GDGCHC 5 cut(s) 153, 609, 639, 911, 1031
MluCI AATT 7 cut(s) 217, 352, 410, 868, 1000, 1079, 1219
Mly113I GGCGCC 2 cut(s) 417, 798
MmeI TCCRAC 1 cut(s) 318
MseI TTAA 2 cut(s) 762, 867
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 1010
MspR9I CCNGG 1 cut(s) 1075
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 1075
MvnI CGCG 4 cut(s) 147, 264, 682, 687
MwoI GCNNNNNNNGC 1 cut(s) 357
NarI GGCGCC 2 cut(s) 417, 798
NdeII GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
NlaIII CATG 3 cut(s) 1123, 1198, 1306
NlaIV GGNNCC 6 cut(s) 104, 418, 531, 606, 700, 799
NmeAIII GCCGAG 1 cut(s) 890
NmuCI GTSAC 3 cut(s) 79, 646, 808
PagI TCATGA 2 cut(s) 1119, 1302
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 4 cut(s) 207, 469, 1251, 1283
PkrI GCNGC 4 cut(s) 52, 55, 323, 684
PluTI GGCGCC 2 cut(s) 420, 801
PpuMI RGGWCCY 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 911
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 1073
PspFI CCCAGC 2 cut(s) 420, 1175
PspGI CCWGG 1 cut(s) 1073
PspN4I GGNNCC 6 cut(s) 104, 418, 531, 606, 700, 799
PspPI GGNCC 2 cut(s) 102, 435
PspPPI RGGWCCY 1 cut(s) 435
SacI GAGCTC 1 cut(s) 911
SaqAI TTAA 2 cut(s) 762, 867
SatI GCNGC 4 cut(s) 51, 54, 322, 683
Sau3AI GATC 7 cut(s) 90, 425, 558, 745, 1087, 1242, 1305
Sau96I GGNCC 2 cut(s) 102, 435
ScrFI CCNGG 1 cut(s) 1075
SduI GDGCHC 5 cut(s) 153, 609, 639, 911, 1031
SfaNI GCATC 2 cut(s) 308, 955
SfcI CTRYAG 1 cut(s) 508
SfoI GGCGCC 2 cut(s) 418, 799
SinI GGWCC 1 cut(s) 435
Sse9I AATT 7 cut(s) 217, 352, 410, 868, 1000, 1079, 1219
SsiI CCGC 8 cut(s) 48, 51, 109, 145, 244, 262, 682, 863
SspDI GGCGCC 2 cut(s) 416, 797
SspI AATATT 1 cut(s) 14
SstI GAGCTC 1 cut(s) 911
StyD4I CCNGG 1 cut(s) 1073
TaaI ACNGT 5 cut(s) 79, 509, 570, 978, 1313
TaiI ACGT 1 cut(s) 1134
TaqI TCGA 2 cut(s) 159, 279
TasI AATT 7 cut(s) 217, 352, 410, 868, 1000, 1079, 1219
TauI GCSGC 2 cut(s) 53, 685
TfiI GAWTC 4 cut(s) 207, 469, 1251, 1283
Tru1I TTAA 2 cut(s) 762, 867
Tru9I TTAA 2 cut(s) 762, 867
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 3 cut(s) 79, 646, 808
TseI GCWGC 2 cut(s) 53, 321
Tsp45I GTSAC 3 cut(s) 79, 646, 808
TspDTI ATGAA 2 cut(s) 325, 627
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 2 cut(s) 410, 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.