Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 143 - 192 | 5.4e-07 | PPR repeat family |
| PPR_3 | PF13812 | 166 - 227 | 1.3e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 175 - 206 | 1.4e-06 | PPR repeat |
| PPR_2 | PF13041 | 178 - 226 | 1.5e-13 | PPR repeat family |
| PPR_2 | PF13041 | 268 - 304 | 2.2e-07 | PPR repeat family |
| PPR_1 | PF12854 | 268 - 296 | 8.2e-07 | PPR repeat |
| PPR | PF01535 | 270 - 299 | 1.2e-06 | PPR repeat |
| PPR_1 | PF12854 | 333 - 365 | 9.4e-06 | PPR repeat |
| PPR_2 | PF13041 | 372 - 420 | 9.4e-20 | PPR repeat family |
| PPR_1 | PF12854 | 372 - 400 | 1.2e-06 | PPR repeat |
| PPR_3 | PF13812 | 372 - 418 | 5.1e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 402 - 425 | 2.6e-08 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 5 cut(s) | 416, 529, 604, 698, 797 |
| AccII | CGCG | 4 cut(s) | 147, 264, 682, 687 |
| AciI | CCGC | 8 cut(s) | 48, 51, 109, 145, 244, 262, 682, 863 |
| AclWI | GGATC | 2 cut(s) | 85, 420 |
| AcsI | RAATTY | 2 cut(s) | 410, 1219 |
| AcyI | GRCGYC | 3 cut(s) | 360, 417, 798 |
| AdeI | CACNNNGTG | 1 cut(s) | 496 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 413, 626 |
| AgsI | TTSAA | 4 cut(s) | 388, 442, 830, 994 |
| AjnI | CCWGG | 1 cut(s) | 1073 |
| AluBI | AGCT | 1 cut(s) | 909 |
| AluI | AGCT | 1 cut(s) | 909 |
| Alw21I | GWGCWC | 1 cut(s) | 911 |
| Alw26I | GTCTC | 1 cut(s) | 584 |
| AlwI | GGATC | 2 cut(s) | 85, 420 |
| AoxI | GGCC | 1 cut(s) | 101 |
| ApeKI | GCWGC | 2 cut(s) | 53, 321 |
| ApoI | RAATTY | 2 cut(s) | 410, 1219 |
| AspLEI | GCGC | 5 cut(s) | 266, 419, 687, 800, 916 |
| AspS9I | GGNCC | 2 cut(s) | 102, 435 |
| AsuHPI | GGTGA | 8 cut(s) | 73, 133, 263, 373, 391, 728, 869, 940 |
| AvaII | GGWCC | 1 cut(s) | 435 |
| BaeGI | GKGCMC | 3 cut(s) | 609, 639, 1031 |
| BanI | GGYRCC | 5 cut(s) | 416, 529, 604, 698, 797 |
| BanII | GRGCYC | 2 cut(s) | 153, 911 |
| BauI | CACGAG | 1 cut(s) | 473 |
| BbsI | GAAGAC | 1 cut(s) | 333 |
| Bbv12I | GWGCWC | 1 cut(s) | 911 |
| BbvI | GCAGC | 2 cut(s) | 40, 333 |
| BccI | CCATC | 3 cut(s) | 245, 619, 772 |
| BciT130I | CCWGG | 1 cut(s) | 1075 |
| BclI | TGATCA | 4 cut(s) | 558, 1087, 1242, 1305 |
| BcoDI | GTCTC | 1 cut(s) | 584 |
| BfmI | CTRYAG | 1 cut(s) | 508 |
| BfoI | RGCGCY | 3 cut(s) | 420, 801, 917 |
| BisI | GCNGC | 4 cut(s) | 51, 54, 322, 683 |
| BlsI | GCNGC | 4 cut(s) | 52, 55, 323, 684 |
| Bme1390I | CCNGG | 1 cut(s) | 1075 |
| Bme18I | GGWCC | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 2 cut(s) | 102, 435 |
| BmiI | GGNNCC | 6 cut(s) | 104, 418, 531, 606, 700, 799 |
| BmrFI | CCNGG | 1 cut(s) | 1075 |
| BmsI | GCATC | 2 cut(s) | 308, 955 |
| BpiI | GAAGAC | 1 cut(s) | 333 |
| BsaHI | GRCGYC | 3 cut(s) | 360, 417, 798 |
| BsaJI | CCNNGG | 1 cut(s) | 202 |
| BsaWI | WCCGGW | 1 cut(s) | 1009 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 98, 128, 173, 203, 881, 911 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 413, 626 |
| Bse1I | ACTGG | 2 cut(s) | 104, 1046 |
| BseBI | CCWGG | 1 cut(s) | 1075 |
| BseDI | CCNNGG | 1 cut(s) | 202 |
| BseGI | GGATG | 7 cut(s) | 240, 778, 970, 1120, 1195, 1214, 1282 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 413, 626 |
| BseNI | ACTGG | 2 cut(s) | 104, 1046 |
| BseRI | GAGGAG | 5 cut(s) | 239, 242, 245, 278, 290 |
| BseSI | GKGCMC | 3 cut(s) | 609, 639, 1031 |
| BseXI | GCAGC | 2 cut(s) | 40, 333 |
| BseYI | CCCAGC | 2 cut(s) | 420, 1175 |
| BsgI | GTGCAG | 1 cut(s) | 579 |
| Bsh1236I | CGCG | 4 cut(s) | 147, 264, 682, 687 |
| BshFI | GGCC | 1 cut(s) | 103 |
| BshNI | GGYRCC | 5 cut(s) | 416, 529, 604, 698, 797 |
| BsiHKAI | GWGCWC | 1 cut(s) | 911 |
| BsiSI | CCGG | 1 cut(s) | 1010 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 413, 626 |
| BsmAI | GTCTC | 1 cut(s) | 584 |
| BsmI | GAATGC | 1 cut(s) | 448 |
| BsnI | GGCC | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 5 cut(s) | 153, 609, 639, 911, 1031 |
| Bsp143I | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| BspACI | CCGC | 8 cut(s) | 48, 51, 109, 145, 244, 262, 682, 863 |
| BspANI | GGCC | 1 cut(s) | 103 |
| BspFNI | CGCG | 4 cut(s) | 147, 264, 682, 687 |
| BspHI | TCATGA | 2 cut(s) | 1119, 1302 |
| BspLI | GGNNCC | 6 cut(s) | 104, 418, 531, 606, 700, 799 |
| BspPI | GGATC | 2 cut(s) | 85, 420 |
| BspT107I | GGYRCC | 5 cut(s) | 416, 529, 604, 698, 797 |
| BsrI | ACTGG | 2 cut(s) | 104, 1046 |
| BssECI | CCNNGG | 1 cut(s) | 202 |
| BssMI | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| BssNI | GRCGYC | 3 cut(s) | 360, 417, 798 |
| BssSI | CACGAG | 1 cut(s) | 473 |
| Bst2BI | CACGAG | 1 cut(s) | 473 |
| Bst2UI | CCWGG | 1 cut(s) | 1075 |
| Bst4CI | ACNGT | 5 cut(s) | 79, 509, 570, 978, 1313 |
| Bst6I | CTCTTC | 3 cut(s) | 338, 887, 977 |
| BstACI | GRCGYC | 3 cut(s) | 360, 417, 798 |
| BstC8I | GCNNGC | 3 cut(s) | 149, 621, 1031 |
| BstF5I | GGATG | 7 cut(s) | 240, 778, 970, 1120, 1195, 1214, 1282 |
| BstFNI | CGCG | 4 cut(s) | 147, 264, 682, 687 |
| BstH2I | RGCGCY | 3 cut(s) | 420, 801, 917 |
| BstHHI | GCGC | 5 cut(s) | 266, 419, 687, 800, 916 |
| BstKTI | GATC | 7 cut(s) | 93, 428, 561, 748, 1090, 1245, 1308 |
| BstMAI | GTCTC | 1 cut(s) | 584 |
| BstMBI | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 357 |
| BstNI | CCWGG | 1 cut(s) | 1075 |
| BstSCI | CCNGG | 1 cut(s) | 1073 |
| BstSFI | CTRYAG | 1 cut(s) | 508 |
| BstSLI | GKGCMC | 3 cut(s) | 609, 639, 1031 |
| BstUI | CGCG | 4 cut(s) | 147, 264, 682, 687 |
| BstV1I | GCAGC | 2 cut(s) | 40, 333 |
| BstV2I | GAAGAC | 1 cut(s) | 333 |
| BsuRI | GGCC | 1 cut(s) | 103 |
| BtgZI | GCGATG | 1 cut(s) | 638 |
| BtsCI | GGATG | 7 cut(s) | 240, 778, 970, 1120, 1195, 1214, 1282 |
| BtsIMutI | CAGTG | 1 cut(s) | 566 |
| Cac8I | GCNNGC | 3 cut(s) | 149, 621, 1031 |
| CciI | TCATGA | 2 cut(s) | 1119, 1302 |
| CfoI | GCGC | 5 cut(s) | 266, 419, 687, 800, 916 |
| Cfr13I | GGNCC | 2 cut(s) | 102, 435 |
| CseI | GACGC | 1 cut(s) | 349 |
| CviAII | CATG | 3 cut(s) | 1120, 1195, 1303 |
| CviJI | RGCY | 9 cut(s) | 103, 151, 758, 909, 988, 1045, 1073, 1108, 1175 |
| CviKI_1 | RGCY | 9 cut(s) | 103, 151, 758, 909, 988, 1045, 1073, 1108, 1175 |
| DinI | GGCGCC | 2 cut(s) | 418, 799 |
| DpnI | GATC | 7 cut(s) | 92, 427, 560, 747, 1089, 1244, 1307 |
| DpnII | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| DraIII | CACNNNGTG | 1 cut(s) | 496 |
| Eam1104I | CTCTTC | 3 cut(s) | 338, 887, 977 |
| EarI | CTCTTC | 3 cut(s) | 338, 887, 977 |
| EciI | GGCGGA | 2 cut(s) | 37, 233 |
| Ecl136II | GAGCTC | 1 cut(s) | 909 |
| Eco24I | GRGCYC | 2 cut(s) | 153, 911 |
| Eco47I | GGWCC | 1 cut(s) | 435 |
| Eco53kI | GAGCTC | 1 cut(s) | 909 |
| EcoICRI | GAGCTC | 1 cut(s) | 909 |
| EcoO109I | RGGNCCY | 1 cut(s) | 435 |
| EcoRI | GAATTC | 1 cut(s) | 1219 |
| EcoRII | CCWGG | 1 cut(s) | 1073 |
| EcoT38I | GRGCYC | 2 cut(s) | 153, 911 |
| EgeI | GGCGCC | 2 cut(s) | 418, 799 |
| EheI | GGCGCC | 2 cut(s) | 418, 799 |
| FaeI | CATG | 3 cut(s) | 1123, 1198, 1306 |
| FatI | CATG | 3 cut(s) | 1119, 1194, 1302 |
| FauI | CCCGC | 2 cut(s) | 152, 269 |
| FbaI | TGATCA | 4 cut(s) | 558, 1087, 1242, 1305 |
| Fnu4HI | GCNGC | 4 cut(s) | 51, 54, 322, 683 |
| FokI | GGATG | 7 cut(s) | 227, 785, 977, 1127, 1202, 1221, 1289 |
| FriOI | GRGCYC | 2 cut(s) | 153, 911 |
| Fsp4HI | GCNGC | 4 cut(s) | 51, 54, 322, 683 |
| GlaI | GCGC | 5 cut(s) | 265, 418, 686, 799, 915 |
| GluI | GCNGC | 4 cut(s) | 51, 54, 322, 683 |
| GsaI | CCCAGC | 2 cut(s) | 424, 1179 |
| HaeII | RGCGCY | 3 cut(s) | 420, 801, 917 |
| HaeIII | GGCC | 1 cut(s) | 103 |
| HapII | CCGG | 1 cut(s) | 1010 |
| HgaI | GACGC | 1 cut(s) | 349 |
| HhaI | GCGC | 5 cut(s) | 266, 419, 687, 800, 916 |
| Hin1I | GRCGYC | 3 cut(s) | 360, 417, 798 |
| Hin1II | CATG | 3 cut(s) | 1123, 1198, 1306 |
| Hin6I | GCGC | 5 cut(s) | 264, 417, 685, 798, 914 |
| HinP1I | GCGC | 5 cut(s) | 264, 417, 685, 798, 914 |
| HinfI | GANTC | 4 cut(s) | 207, 469, 1251, 1283 |
| HpaII | CCGG | 1 cut(s) | 1010 |
| HphI | GGTGA | 8 cut(s) | 73, 133, 263, 373, 391, 728, 869, 940 |
| Hpy166II | GTNNAC | 2 cut(s) | 490, 974 |
| Hpy188I | TCNGA | 9 cut(s) | 90, 206, 295, 317, 468, 504, 1092, 1114, 1218 |
| Hpy188III | TCNNGA | 9 cut(s) | 19, 388, 473, 646, 743, 1120, 1143, 1303, 1317 |
| Hpy8I | GTNNAC | 2 cut(s) | 490, 974 |
| Hpy99I | CGWCG | 1 cut(s) | 365 |
| HpyAV | CCTTC | 7 cut(s) | 394, 824, 944, 949, 1048, 1119, 1267 |
| HpyCH4III | ACNGT | 5 cut(s) | 79, 509, 570, 978, 1313 |
| HpyCH4IV | ACGT | 1 cut(s) | 1131 |
| HpyCH4V | TGCA | 4 cut(s) | 321, 596, 1005, 1019 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 357 |
| HpySE526I | ACGT | 1 cut(s) | 1131 |
| Hsp92I | GRCGYC | 3 cut(s) | 360, 417, 798 |
| Hsp92II | CATG | 3 cut(s) | 1123, 1198, 1306 |
| HspAI | GCGC | 5 cut(s) | 264, 417, 685, 798, 914 |
| KasI | GGCGCC | 2 cut(s) | 416, 797 |
| Ksp22I | TGATCA | 4 cut(s) | 558, 1087, 1242, 1305 |
| Kzo9I | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| Lsp1109I | GCAGC | 2 cut(s) | 40, 333 |
| LweI | GCATC | 2 cut(s) | 308, 955 |
| MaeII | ACGT | 1 cut(s) | 1131 |
| MaeIII | GTNAC | 3 cut(s) | 79, 646, 808 |
| MalI | GATC | 7 cut(s) | 92, 427, 560, 747, 1089, 1244, 1307 |
| MboI | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| MboII | GAAGA | 7 cut(s) | 169, 325, 338, 904, 994, 1006, 1009 |
| MhlI | GDGCHC | 5 cut(s) | 153, 609, 639, 911, 1031 |
| MluCI | AATT | 7 cut(s) | 217, 352, 410, 868, 1000, 1079, 1219 |
| Mly113I | GGCGCC | 2 cut(s) | 417, 798 |
| MmeI | TCCRAC | 1 cut(s) | 318 |
| MseI | TTAA | 2 cut(s) | 762, 867 |
| MspA1I | CMGCKG | 1 cut(s) | 53 |
| MspI | CCGG | 1 cut(s) | 1010 |
| MspR9I | CCNGG | 1 cut(s) | 1075 |
| Mva1269I | GAATGC | 1 cut(s) | 448 |
| MvaI | CCWGG | 1 cut(s) | 1075 |
| MvnI | CGCG | 4 cut(s) | 147, 264, 682, 687 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 357 |
| NarI | GGCGCC | 2 cut(s) | 417, 798 |
| NdeII | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| NlaIII | CATG | 3 cut(s) | 1123, 1198, 1306 |
| NlaIV | GGNNCC | 6 cut(s) | 104, 418, 531, 606, 700, 799 |
| NmeAIII | GCCGAG | 1 cut(s) | 890 |
| NmuCI | GTSAC | 3 cut(s) | 79, 646, 808 |
| PagI | TCATGA | 2 cut(s) | 1119, 1302 |
| PctI | GAATGC | 1 cut(s) | 448 |
| PfeI | GAWTC | 4 cut(s) | 207, 469, 1251, 1283 |
| PkrI | GCNGC | 4 cut(s) | 52, 55, 323, 684 |
| PluTI | GGCGCC | 2 cut(s) | 420, 801 |
| PpuMI | RGGWCCY | 1 cut(s) | 435 |
| Psp124BI | GAGCTC | 1 cut(s) | 911 |
| Psp5II | RGGWCCY | 1 cut(s) | 435 |
| Psp6I | CCWGG | 1 cut(s) | 1073 |
| PspFI | CCCAGC | 2 cut(s) | 420, 1175 |
| PspGI | CCWGG | 1 cut(s) | 1073 |
| PspN4I | GGNNCC | 6 cut(s) | 104, 418, 531, 606, 700, 799 |
| PspPI | GGNCC | 2 cut(s) | 102, 435 |
| PspPPI | RGGWCCY | 1 cut(s) | 435 |
| SacI | GAGCTC | 1 cut(s) | 911 |
| SaqAI | TTAA | 2 cut(s) | 762, 867 |
| SatI | GCNGC | 4 cut(s) | 51, 54, 322, 683 |
| Sau3AI | GATC | 7 cut(s) | 90, 425, 558, 745, 1087, 1242, 1305 |
| Sau96I | GGNCC | 2 cut(s) | 102, 435 |
| ScrFI | CCNGG | 1 cut(s) | 1075 |
| SduI | GDGCHC | 5 cut(s) | 153, 609, 639, 911, 1031 |
| SfaNI | GCATC | 2 cut(s) | 308, 955 |
| SfcI | CTRYAG | 1 cut(s) | 508 |
| SfoI | GGCGCC | 2 cut(s) | 418, 799 |
| SinI | GGWCC | 1 cut(s) | 435 |
| Sse9I | AATT | 7 cut(s) | 217, 352, 410, 868, 1000, 1079, 1219 |
| SsiI | CCGC | 8 cut(s) | 48, 51, 109, 145, 244, 262, 682, 863 |
| SspDI | GGCGCC | 2 cut(s) | 416, 797 |
| SspI | AATATT | 1 cut(s) | 14 |
| SstI | GAGCTC | 1 cut(s) | 911 |
| StyD4I | CCNGG | 1 cut(s) | 1073 |
| TaaI | ACNGT | 5 cut(s) | 79, 509, 570, 978, 1313 |
| TaiI | ACGT | 1 cut(s) | 1134 |
| TaqI | TCGA | 2 cut(s) | 159, 279 |
| TasI | AATT | 7 cut(s) | 217, 352, 410, 868, 1000, 1079, 1219 |
| TauI | GCSGC | 2 cut(s) | 53, 685 |
| TfiI | GAWTC | 4 cut(s) | 207, 469, 1251, 1283 |
| Tru1I | TTAA | 2 cut(s) | 762, 867 |
| Tru9I | TTAA | 2 cut(s) | 762, 867 |
| TscAI | CASTG | 1 cut(s) | 573 |
| TseFI | GTSAC | 3 cut(s) | 79, 646, 808 |
| TseI | GCWGC | 2 cut(s) | 53, 321 |
| Tsp45I | GTSAC | 3 cut(s) | 79, 646, 808 |
| TspDTI | ATGAA | 2 cut(s) | 325, 627 |
| TspGWI | ACGGA | 1 cut(s) | 418 |
| TspRI | CASTG | 1 cut(s) | 573 |
| VpaK11BI | GGWCC | 1 cut(s) | 435 |
| XapI | RAATTY | 2 cut(s) | 410, 1219 |