Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001836.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

120243 .. 121190

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001836.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgcctgcgatgggatttgtgcccaatgtggtgacttttactaccattttgggtggttatgtgtcgcggcgagatatggttggtgccaagagggtgtttggtgagattttggacagagggtggtgtcctgatgtgactacatataccatattgatggatgggtatgtgaagctggttgaggctattaaggttatggatgagatggaggataatggggttggcgccaatgagaagtcgggtgaagcggttaatttgcttgatgatatggtggagaagaggtatataccgagctcggcgctctgttgtaaggtgattgatgttttgtgttgcgaagggaaggtggaggatgcttgtgaactttggaagaggcttttgaagaagaattgcacaccagataatgcagtattgggcacgctcatatactggctttgtaagaagggagaaatgtgggaagccaggaaattgtttgatcagattgagatgagtgagcctccggatatcatgacttacaatgtgcttatttctggaatgtgtgaagtgggggagttgtgtgaggctgggaggttgtgggatgacatggtggagaaaggatgttctccgaattcttttacatataatgtattgatcaaaggattttgtaagattggaaaagcgaaggagggaattaggattttggacgagatgttcgaaaaaggctgtttgccaaacaagtctacttatgctatgttgatcgaggggctctgtgactcacgagaggaagctgaaatcactagagtaatatctatggcaatgtcaaatggagacattgacagtgattcctgggatcttttccttactaaggttgttggtgatttggatactggggaaagtgttctaaacagaatactactggagaatgctgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

301

Amino Acids

33.58

Weight (kDa)

4.56

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 221
AccI	GTMKAC	1 cut(s)	713
AccII	CGCG	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	2 cut(s)	67, 245
AclWI	GGATC	1 cut(s)	831
AcsI	RAATTY	1 cut(s)	601
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	11, 838
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	2 cut(s)	455, 818
AloI	GAACNNNNNNTCC	2 cut(s)	668, 700
AluBI	AGCT	3 cut(s)	172, 291, 761
AluI	AGCT	3 cut(s)	172, 291, 761
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	1 cut(s)	831
Aor13HI	TCCGGA	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	2 cut(s)	224, 298
AsuHPI	GGTGA	5 cut(s)	43, 113, 251, 322, 860
AsuII	TTCGAA	1 cut(s)	687
BaeGI	GKGCMC	2 cut(s)	24, 413
BanI	GGYRCC	2 cut(s)	83, 221
BanII	GRGCYC	2 cut(s)	293, 741
BauI	CACGAG	1 cut(s)	750
Bbv12I	GWGCWC	1 cut(s)	293
BccI	CCATC	4 cut(s)	4, 148, 152, 196
BciT130I	CCWGG	2 cut(s)	457, 820
BciVI	GTATCC	1 cut(s)	850
BclI	TGATCA	2 cut(s)	469, 624
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	1 cut(s)	771
BfoI	RGCGCY	2 cut(s)	225, 299
BfuI	GTATCC	1 cut(s)	850
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	457, 820
BmiI	GGNNCC	2 cut(s)	85, 223
BmrFI	CCNGG	2 cut(s)	457, 820
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	870
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
Bpu14I	TTCGAA	1 cut(s)	687
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	819
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 838
Bse1I	ACTGG	3 cut(s)	428, 865, 894
Bse3DI	GCAATG	1 cut(s)	795
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	457, 820
BseDI	CCNNGG	1 cut(s)	819
BseGI	GGATG	5 cut(s)	163, 202, 352, 577, 596
BseLI	CCNNNNNNNGG	2 cut(s)	11, 838
BseMI	GCAATG	1 cut(s)	795
BseNI	ACTGG	3 cut(s)	428, 865, 894
BseSI	GKGCMC	2 cut(s)	24, 413
BseYI	CCCAGC	1 cut(s)	557
Bsh1236I	CGCG	1 cut(s)	67
BshNI	GGYRCC	2 cut(s)	83, 221
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	11, 838
BsmAI	GTCTC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	901
Bsp119I	TTCGAA	1 cut(s)	687
Bsp1286I	GDGCHC	4 cut(s)	24, 293, 413, 741
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	4 cut(s)	469, 624, 729, 823
BspACI	CCGC	2 cut(s)	67, 245
BspEI	TCCGGA	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	85, 223
BspPI	GGATC	1 cut(s)	831
BspT104I	TTCGAA	1 cut(s)	687
BspT107I	GGYRCC	2 cut(s)	83, 221
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	428, 865, 894
BssECI	CCNNGG	1 cut(s)	819
BssMI	GATC	4 cut(s)	469, 624, 729, 823
BssNI	GRCGYC	1 cut(s)	222
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	457, 820
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	2 cut(s)	269, 359
BstACI	GRCGYC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	6, 413
BstDEI	CTNAG	1 cut(s)	837
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstF5I	GGATG	5 cut(s)	163, 202, 352, 577, 596
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	2 cut(s)	225, 299
BstHHI	GCGC	2 cut(s)	224, 298
BstKTI	GATC	4 cut(s)	472, 627, 732, 826
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	4 cut(s)	469, 624, 729, 823
BstNI	CCWGG	2 cut(s)	457, 820
BstSCI	CCNGG	2 cut(s)	455, 818
BstSLI	GKGCMC	2 cut(s)	24, 413
BstUI	CGCG	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	823
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	823
BsuI	GTATCC	1 cut(s)	850
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	5 cut(s)	163, 202, 352, 577, 596
BtsIMutI	CAGTG	1 cut(s)	817
Cac8I	GCNNGC	2 cut(s)	6, 413
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	2 cut(s)	224, 298
CviAII	CATG	2 cut(s)	502, 577
DdeI	CTNAG	1 cut(s)	837
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	4 cut(s)	471, 626, 731, 825
DpnII	GATC	4 cut(s)	469, 624, 729, 823
Eam1104I	CTCTTC	2 cut(s)	269, 359
EarI	CTCTTC	2 cut(s)	269, 359
Ecl136II	GAGCTC	1 cut(s)	291
Eco24I	GRGCYC	2 cut(s)	293, 741
Eco32I	GATATC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	455, 818
EcoRV	GATATC	1 cut(s)	499
EcoT38I	GRGCYC	2 cut(s)	293, 741
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	2 cut(s)	505, 580
FatI	CATG	2 cut(s)	501, 576
FbaI	TGATCA	2 cut(s)	469, 624
FblI	GTMKAC	1 cut(s)	713
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	5 cut(s)	170, 209, 359, 584, 603
FriOI	GRGCYC	2 cut(s)	293, 741
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	2 cut(s)	223, 297
GluI	GCNGC	1 cut(s)	68
GsaI	CCCAGC	1 cut(s)	561
HaeII	RGCGCY	2 cut(s)	225, 299
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	2 cut(s)	224, 298
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	505, 580
Hin6I	GCGC	2 cut(s)	222, 296
HinP1I	GCGC	2 cut(s)	222, 296
HinfI	GANTC	2 cut(s)	746, 815
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	5 cut(s)	43, 113, 251, 322, 860
Hpy166II	GTNNAC	2 cut(s)	356, 714
Hpy188I	TCNGA	2 cut(s)	474, 600
Hpy188III	TCNNGA	5 cut(s)	128, 494, 502, 525, 750
Hpy8I	GTNNAC	2 cut(s)	356, 714
HpyAV	CCTTC	4 cut(s)	326, 331, 430, 649
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4V	TGCA	2 cut(s)	387, 401
HpyF3I	CTNAG	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	505, 580
HspAI	GCGC	2 cut(s)	222, 296
KasI	GGCGCC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	493
Ksp22I	TGATCA	2 cut(s)	469, 624
Kzo9I	GATC	4 cut(s)	469, 624, 729, 823
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	771
MaeIII	GTNAC	3 cut(s)	31, 133, 743
MalI	GATC	4 cut(s)	471, 626, 731, 825
MboI	GATC	4 cut(s)	469, 624, 729, 823
MboII	GAAGA	4 cut(s)	286, 376, 388, 391
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	4 cut(s)	24, 293, 413, 741
MluCI	AATT	5 cut(s)	250, 382, 461, 601, 663
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	740
MroI	TCCGGA	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	870
MseI	TTAA	2 cut(s)	186, 249
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	457, 820
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	2 cut(s)	457, 820
MvnI	CGCG	1 cut(s)	67
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	4 cut(s)	469, 624, 729, 823
NlaIII	CATG	2 cut(s)	505, 580
NlaIV	GGNNCC	2 cut(s)	85, 223
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	3 cut(s)	31, 133, 743
NspV	TTCGAA	1 cut(s)	687
PagI	TCATGA	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PctI	GAATGC	1 cut(s)	901
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	1 cut(s)	815
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	740
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	740
Psp124BI	GAGCTC	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	455, 818
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	2 cut(s)	455, 818
PspN4I	GGNNCC	2 cut(s)	85, 223
PsuI	RGATCY	1 cut(s)	823
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	186, 249
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	469, 624, 729, 823
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	2 cut(s)	457, 820
SduI	GDGCHC	4 cut(s)	24, 293, 413, 741
SetI	ASST	9 cut(s)	174, 192, 281, 293, 312, 342, 566, 763, 843
SfaNI	GCATC	1 cut(s)	337
SfoI	GGCGCC	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	250, 382, 461, 601, 663
SsiI	CCGC	2 cut(s)	67, 245
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	771
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	455, 818
TaaI	ACNGT	1 cut(s)	812
TaqI	TCGA	2 cut(s)	687, 732
TasI	AATT	5 cut(s)	250, 382, 461, 601, 663
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	2 cut(s)	186, 249
Tru9I	TTAA	2 cut(s)	186, 249
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	3 cut(s)	31, 133, 743
Tsp45I	GTSAC	3 cut(s)	31, 133, 743
TspRI	CASTG	1 cut(s)	817
XagI	CCTNNNNNAGG	1 cut(s)	836
XapI	RAATTY	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.