Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024761.1

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

11498 .. 12328

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024761.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgctgcttcgccggaacctctcccccatacccttctctctcctccactcaatcaccgccgtccctttctccacctccacctccgccgtcgatttcctccactcctacaccgtcacccctccgatcgaaaactggccccaacacctccacccaaagcgcctcatctccctcatcacccgcgagcccaaactcgacctcgccctccaaatcttccaccacgcctccaaataccaccccggattccaccataactaccacacctaccacgccatcatccgccgcctccttcgctcccacgcttttcacctcgtcgaccccctcctctccgacctccgcagctccaatctccgatgcggcgaggacctcttcatctccctaatccgcaattacggcgtcgtttcacgccctaaactcgccttcaagacatttatcaccattccgaaattcggcgcccaacgattcgtgaggtccttgaatgcgttgctgaacgctttggttcagaatcacgagtacagattggttcactcggtgttttggaactgtagggagaggttcggggtggcgccgaatgtatttagttgtaatatattgatcaaagcactgtgtaagagaaatgatttggagactgcacaccaggtgctcgatgaaatgcctgccattggatttgtgcccaatgtggtgacttttactaccattttgggtggttatgtgtcgcggcgcgatatggttggtgccaagagggtgtttggtgagattttggacagagggtggtgtcctgatgtgactacatataccatattgttgtgtttttggctcattgatacaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

276

Amino Acids

31.72

Weight (kDa)

9.63

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	449, 562, 731
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	3 cut(s)	180, 715, 720
AciI	CCGC	9 cut(s)	57, 84, 178, 277, 280, 334, 354, 382, 715
AcsI	RAATTY	1 cut(s)	443
AcyI	GRCGYC	3 cut(s)	393, 450, 563
AdeI	CACNNNGTG	2 cut(s)	529, 637
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	2 cut(s)	446, 659
AgsI	TTSAA	2 cut(s)	421, 475
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	617
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	4, 336
ApoI	RAATTY	1 cut(s)	443
AspLEI	GCGC	4 cut(s)	159, 452, 565, 720
AspS9I	GGNCC	3 cut(s)	135, 361, 468
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	7 cut(s)	46, 106, 166, 296, 424, 691, 761
AvaII	GGWCC	2 cut(s)	361, 468
BaeGI	GKGCMC	1 cut(s)	672
BanI	GGYRCC	3 cut(s)	449, 562, 731
BanII	GRGCYC	1 cut(s)	186
BauI	CACGAG	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	3 cut(s)	44, 71, 406
BciT130I	CCWGG	1 cut(s)	635
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	541
BfoI	RGCGCY	3 cut(s)	160, 453, 566
BisI	GCNGC	5 cut(s)	5, 280, 337, 355, 716
BlsI	GCNGC	5 cut(s)	6, 281, 338, 356, 717
Bme1390I	CCNGG	2 cut(s)	237, 635
Bme18I	GGWCC	2 cut(s)	361, 468
BmgT120I	GGNCC	3 cut(s)	135, 361, 468
BmiI	GGNNCC	5 cut(s)	17, 137, 451, 564, 733
BmrFI	CCNGG	2 cut(s)	237, 635
BmsI	GCATC	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	237
BsaHI	GRCGYC	3 cut(s)	393, 450, 563
BsaJI	CCNNGG	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 659
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	446, 659
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	32, 311
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	3 cut(s)	180, 715, 720
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	3 cut(s)	449, 562, 731
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	2 cut(s)	13, 237
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	446, 659
BsmAI	GTCTC	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	3 cut(s)	186, 642, 672
Bsp143I	GATC	2 cut(s)	123, 591
BspACI	CCGC	9 cut(s)	57, 84, 178, 277, 280, 334, 354, 382, 715
BspANI	GGCC	1 cut(s)	136
BspFNI	CGCG	3 cut(s)	180, 715, 720
BspLI	GGNNCC	5 cut(s)	17, 137, 451, 564, 733
BspT107I	GGYRCC	3 cut(s)	449, 562, 731
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	123, 591
BssNI	GRCGYC	3 cut(s)	393, 450, 563
BssSI	CACGAG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	3 cut(s)	112, 542, 603
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	3 cut(s)	393, 450, 563
BstC8I	GCNNGC	2 cut(s)	182, 654
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	3 cut(s)	180, 715, 720
BstH2I	RGCGCY	3 cut(s)	160, 453, 566
BstHHI	GCGC	4 cut(s)	159, 452, 565, 720
BstKTI	GATC	2 cut(s)	126, 594
BstMAI	GTCTC	1 cut(s)	617
BstMBI	GATC	2 cut(s)	123, 591
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	288, 390
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	235, 633
BstSFI	CTRYAG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	672
BstUI	CGCG	3 cut(s)	180, 715, 720
BstV1I	GCAGC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	599
Cac8I	GCNNGC	2 cut(s)	182, 654
CfoI	GCGC	4 cut(s)	159, 452, 565, 720
Cfr13I	GGNCC	3 cut(s)	135, 361, 468
CseI	GACGC	1 cut(s)	382
CsiI	ACCWGGT	1 cut(s)	633
Csp6I	GTAC	1 cut(s)	511
CviJI	RGCY	4 cut(s)	136, 184, 339, 814
CviKI_1	RGCY	4 cut(s)	136, 184, 339, 814
CviQI	GTAC	1 cut(s)	511
DinI	GGCGCC	2 cut(s)	451, 564
DpnI	GATC	2 cut(s)	125, 593
DpnII	GATC	2 cut(s)	123, 591
DraIII	CACNNNGTG	2 cut(s)	529, 637
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	2 cut(s)	73, 266
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	361, 468
EcoO109I	RGGNCCY	2 cut(s)	361, 468
EcoRII	CCWGG	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	186
EgeI	GGCGCC	2 cut(s)	451, 564
EheI	GGCGCC	2 cut(s)	451, 564
FaiI	YATR	8 cut(s)	29, 249, 587, 708, 725, 790, 792, 797
FaqI	GGGAC	1 cut(s)	47
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	591
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	5, 280, 337, 355, 716
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	5 cut(s)	5, 280, 337, 355, 716
GlaI	GCGC	4 cut(s)	158, 451, 564, 719
GluI	GCNGC	5 cut(s)	5, 280, 337, 355, 716
HaeII	RGCGCY	3 cut(s)	160, 453, 566
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	2 cut(s)	13, 237
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	4 cut(s)	159, 452, 565, 720
Hin1I	GRCGYC	3 cut(s)	393, 450, 563
Hin6I	GCGC	4 cut(s)	157, 450, 563, 718
HinP1I	GCGC	4 cut(s)	157, 450, 563, 718
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	240, 459, 502
HpaII	CCGG	2 cut(s)	13, 237
HphI	GGTGA	7 cut(s)	46, 106, 166, 296, 424, 691, 761
Hpy166II	GTNNAC	2 cut(s)	313, 523
Hpy188I	TCNGA	6 cut(s)	123, 328, 350, 441, 501, 830
Hpy188III	TCNNGA	4 cut(s)	421, 463, 506, 776
Hpy8I	GTNNAC	2 cut(s)	313, 523
Hpy99I	CGWCG	3 cut(s)	92, 314, 398
HpyAV	CCTTC	3 cut(s)	43, 296, 427
HpyCH4III	ACNGT	3 cut(s)	112, 542, 603
HpyCH4V	TGCA	1 cut(s)	629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	288, 390
Hsp92I	GRCGYC	3 cut(s)	393, 450, 563
HspAI	GCGC	4 cut(s)	157, 450, 563, 718
KasI	GGCGCC	2 cut(s)	449, 562
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	123, 591
LmnI	GCTCC	2 cut(s)	296, 344
LpnPI	CCDG	7 cut(s)	26, 118, 250, 620, 647, 666, 789
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	341
MabI	ACCWGGT	1 cut(s)	633
MaeIII	GTNAC	3 cut(s)	112, 679, 781
MalI	GATC	2 cut(s)	125, 593
MboI	GATC	2 cut(s)	123, 591
MboII	GAAGA	2 cut(s)	202, 358
MhlI	GDGCHC	3 cut(s)	186, 642, 672
MluCI	AATT	2 cut(s)	385, 443
Mly113I	GGCGCC	2 cut(s)	450, 563
MmeI	TCCRAC	1 cut(s)	351
MspI	CCGG	2 cut(s)	13, 237
MspR9I	CCNGG	2 cut(s)	237, 635
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	635
MvnI	CGCG	3 cut(s)	180, 715, 720
MwoI	GCNNNNNNNGC	2 cut(s)	288, 390
NarI	GGCGCC	2 cut(s)	450, 563
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	123, 591
NlaIV	GGNNCC	5 cut(s)	17, 137, 451, 564, 733
NmuCI	GTSAC	3 cut(s)	112, 679, 781
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	3 cut(s)	240, 459, 502
PkrI	GCNGC	5 cut(s)	6, 281, 338, 356, 717
Ple19I	CGATCG	1 cut(s)	126
PluTI	GGCGCC	2 cut(s)	453, 566
PpuMI	RGGWCCY	2 cut(s)	361, 468
Psp5II	RGGWCCY	2 cut(s)	361, 468
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	5 cut(s)	17, 137, 451, 564, 733
PspPI	GGNCC	3 cut(s)	135, 361, 468
PspPPI	RGGWCCY	2 cut(s)	361, 468
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
SalI	GTCGAC	1 cut(s)	311
SatI	GCNGC	5 cut(s)	5, 280, 337, 355, 716
Sau3AI	GATC	2 cut(s)	123, 591
Sau96I	GGNCC	3 cut(s)	135, 361, 468
ScrFI	CCNGG	2 cut(s)	237, 635
SduI	GDGCHC	3 cut(s)	186, 642, 672
SexAI	ACCWGGT	1 cut(s)	633
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	541
SfoI	GGCGCC	2 cut(s)	451, 564
SinI	GGWCC	2 cut(s)	361, 468
Sse9I	AATT	2 cut(s)	385, 443
SsiI	CCGC	9 cut(s)	57, 84, 178, 277, 280, 334, 354, 382, 715
SspDI	GGCGCC	2 cut(s)	449, 562
StyD4I	CCNGG	2 cut(s)	235, 633
TaaI	ACNGT	3 cut(s)	112, 542, 603
TaqI	TCGA	5 cut(s)	90, 126, 192, 312, 642
TasI	AATT	2 cut(s)	385, 443
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	3 cut(s)	282, 357, 718
TfiI	GAWTC	3 cut(s)	240, 459, 502
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	3 cut(s)	112, 679, 781
TseI	GCWGC	2 cut(s)	4, 336
Tsp45I	GTSAC	3 cut(s)	112, 679, 781
TspDTI	ATGAA	2 cut(s)	358, 660
TspRI	CASTG	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	361, 468
XapI	RAATTY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.