Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

31993407 .. 31993784

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCTGCTGCGCCGGAACCTCTCCCCCAAACCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCCCTTCTCCACTTCCACCTCCGCCGTCGATTTCCTCCACTCCTACACCGTCACCCCTCCGATCCAAGACTGGCCCCACCACCTCCACCCAAAGCTCCTCATCTCCCTCATCACCCGCGAGCCCAAACTCGACCTCTCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGGATTTCACCATAATTACCACACCTACCACGCCATCATCCGCCGCCTCCTCCGCTCCCGCACTTTTCACCTCGTCGACCCCTCCTCTCCGACCTCCGCAGCTCCAATCTCCGATGCAGCGAAGACCTCTTCATCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

10.08

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	180
AciI	CCGC	8 cut(s)	57, 84, 178, 277, 280, 289, 295, 333
AclWI	GGATC	1 cut(s)	118
AluBI	AGCT	2 cut(s)	157, 338
AluI	AGCT	2 cut(s)	157, 338
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	4, 7, 335, 353
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	135
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	5 cut(s)	46, 106, 166, 236, 296
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	347, 365
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	2 cut(s)	44, 71
BcnI	CCSGG	1 cut(s)	237
BisI	GCNGC	5 cut(s)	5, 8, 280, 336, 354
BlsI	GCNGC	5 cut(s)	6, 9, 281, 337, 355
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	17, 137
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse1I	ACTGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	4 cut(s)	32, 149, 275, 310
BseXI	GCAGC	2 cut(s)	347, 365
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	13, 237
BslFI	GGGAC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	8 cut(s)	57, 84, 178, 277, 280, 289, 295, 333
BspANI	GGCC	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	17, 137
BspPI	GGATC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	235
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	347, 365
BstV2I	GAAGAC	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	135
CviJI	RGCY	4 cut(s)	136, 157, 184, 338
CviKI_1	RGCY	4 cut(s)	136, 157, 184, 338
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EciI	GGCGGA	2 cut(s)	73, 266
Eco24I	GRGCYC	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	186
FaiI	YATR	1 cut(s)	249
FaqI	GGGAC	1 cut(s)	47
FauI	CCCGC	2 cut(s)	185, 302
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	5, 8, 280, 336, 354
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	5 cut(s)	5, 8, 280, 336, 354
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	5 cut(s)	5, 8, 280, 336, 354
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	2 cut(s)	13, 237
HhaI	GCGC	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	13, 237
HphI	GGTGA	5 cut(s)	46, 106, 166, 236, 296
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	123, 327, 349
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	2 cut(s)	92, 314
HpyAV	CCTTC	2 cut(s)	43, 76
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	288
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	162, 296, 343
LpnPI	CCDG	3 cut(s)	26, 118, 250
Lsp1109I	GCAGC	2 cut(s)	347, 365
LweI	GCATC	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	125
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	1 cut(s)	123
MboII	GAAGA	3 cut(s)	202, 357, 370
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	350
MspI	CCGG	2 cut(s)	13, 237
MspR9I	CCNGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	123
NlaIV	GGNNCC	2 cut(s)	17, 137
NmuCI	GTSAC	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	6, 9, 281, 337, 355
PspN4I	GGNNCC	2 cut(s)	17, 137
PspPI	GGNCC	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	311
SatI	GCNGC	5 cut(s)	5, 8, 280, 336, 354
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	340
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	8 cut(s)	57, 84, 178, 277, 280, 289, 295, 333
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	3 cut(s)	90, 192, 312
TasI	AATT	1 cut(s)	250
TauI	GCSGC	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	4 cut(s)	4, 7, 335, 353
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.