Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Forward (+)

36268185 .. 36268679

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTGCTTCGCCGGAACCTCTCCCCTAAACCCTTCTCTCTCCTCCACTCAATCACCGCCGTCCCCTTCTCCACCTCCGCCGTTGATTTCCTCCCCTCCTACACCGTCACCCCTCCAATCCAAGACTGGCTCGACCGCCTCTCCCTAAAGCGCCTCATCTCCCTCATCACCCGCGGGCCCAAACTCGACCTCGCCCTCCAAATCTTCCACCACGCCTCCAAATACCACCCCGTATTTCACCATAATTACCACACCTACCACGCCATCATCCGCCGCCTCCTCCGCTACCGCGCTTTTCACCTCATTGACCCCCTCCTCTCCGACCTCCGCACCTCCAATCTCCGATGCAGCGAAGACCTCTTCATCTCCTTAATCCGCAACTACGGCGTCGTTTCTCGCCCCAAACTCGCATTCAAGACATTTATCACCATTCCGAAATTCGGCGTACAACGATCTGTGAGGTCGTTGAATGCGCTGCTGAACGCTTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

164

Amino Acids

18.97

Weight (kDa)

10.78

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	174, 291
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	415, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AoxI	GGCC	1 cut(s)	176
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	4, 348, 475
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	3 cut(s)	153, 293, 475
AspS9I	GGNCC	2 cut(s)	176, 177
AsuHPI	GGTGA	6 cut(s)	46, 100, 160, 230, 290, 418
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	360, 462
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	3 cut(s)	44, 65, 400
BfoI	RGCGCY	1 cut(s)	154
BisI	GCNGC	4 cut(s)	5, 274, 349, 476
BlsI	GCNGC	4 cut(s)	6, 275, 350, 477
BmgT120I	GGNCC	2 cut(s)	176, 177
BmiI	GGNNCC	2 cut(s)	17, 178
BmsI	GCATC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	3 cut(s)	32, 269, 305
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	360, 462
Bsh1236I	CGCG	2 cut(s)	174, 291
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	178
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	2 cut(s)	410, 475
BsnI	GGCC	1 cut(s)	178
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	452
BspANI	GGCC	1 cut(s)	178
BspFNI	CGCG	2 cut(s)	174, 291
BspLI	GGNNCC	2 cut(s)	17, 178
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	452
BssNI	GRCGYC	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	365
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	267
BstFNI	CGCG	2 cut(s)	174, 291
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	3 cut(s)	153, 293, 475
BstKTI	GATC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	452
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 384
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	2 cut(s)	174, 291
BstV1I	GCAGC	2 cut(s)	360, 462
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	3 cut(s)	153, 293, 475
Cfr13I	GGNCC	2 cut(s)	176, 177
Cfr42I	CCGCGG	1 cut(s)	175
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	446
CviJI	RGCY	2 cut(s)	130, 178
CviKI_1	RGCY	2 cut(s)	130, 178
CviQI	GTAC	1 cut(s)	446
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	2 cut(s)	67, 260
Eco24I	GRGCYC	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	180
FaiI	YATR	1 cut(s)	243
FaqI	GGGAC	1 cut(s)	47
FauI	CCCGC	2 cut(s)	167, 179
Fnu4HI	GCNGC	4 cut(s)	5, 274, 349, 476
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	5, 274, 349, 476
GlaI	GCGC	3 cut(s)	152, 292, 474
GluI	GCNGC	4 cut(s)	5, 274, 349, 476
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	3 cut(s)	153, 293, 475
Hin1I	GRCGYC	1 cut(s)	387
Hin6I	GCGC	3 cut(s)	151, 291, 473
HinP1I	GCGC	3 cut(s)	151, 291, 473
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	6 cut(s)	46, 100, 160, 230, 290, 418
Hpy188I	TCNGA	3 cut(s)	322, 344, 435
Hpy188III	TCNNGA	1 cut(s)	415
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	2 cut(s)	43, 76
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 384
Hsp92I	GRCGYC	1 cut(s)	387
HspAI	GCGC	3 cut(s)	151, 291, 473
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	452
LpnPI	CCDG	2 cut(s)	26, 112
Lsp1109I	GCAGC	2 cut(s)	360, 462
LweI	GCATC	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	3 cut(s)	196, 352, 365
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	244, 437
MmeI	TCCRAC	1 cut(s)	345
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	1 cut(s)	13
Mva1269I	GAATGC	2 cut(s)	410, 475
MvnI	CGCG	2 cut(s)	174, 291
MwoI	GCNNNNNNNGC	2 cut(s)	282, 384
NdeII	GATC	1 cut(s)	452
NlaIV	GGNNCC	2 cut(s)	17, 178
NmuCI	GTSAC	1 cut(s)	106
PctI	GAATGC	2 cut(s)	410, 475
PkrI	GCNGC	4 cut(s)	6, 275, 350, 477
PspN4I	GGNNCC	2 cut(s)	17, 178
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	176, 177
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SacII	CCGCGG	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	4 cut(s)	5, 274, 349, 476
Sau3AI	GATC	1 cut(s)	452
Sau96I	GGNCC	2 cut(s)	176, 177
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	21, 77, 192, 257, 303, 327, 335, 360, 464
SfaNI	GCATC	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	175
Sse9I	AATT	2 cut(s)	244, 437
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	132, 186
TasI	AATT	2 cut(s)	244, 437
TauI	GCSGC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	3 cut(s)	4, 348, 475
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	352
XapI	RAATTY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.