Rmu_sc0000566.1_g000026

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000566.1
OG0000530
Physical Location & Seq
Reverse (-)
125753 .. 126022
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000566.1_g000026.1.cds

Sequence Viewer

Length: 270 bp
atgcctgccatgggatttgtgcccaatgtggtgacttttactaccattttgggttccaagagagtgtctggtgagtttttggacagagggtggtttcctgatgtgactacttatactatattgatggatgggtatgtggagcaggggaagctggttgaggctattaaggtcatggatgagatggaggataatgggattggcgccaatgaggttacttatggagttatgattgaaggttattgcaaggaacaagtcgggcgaagcggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

89

Amino Acids

9.79

Weight (kDa)

4.39

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca FvH4_7g08341 FvH4_7g08360
malus_domestica MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica Prupe.2G106500_v2.0.a1
pyrus_communis pycom02g20040
rosa_chinensis RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 43, 83
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 200
BccI CCATC 3 cut(s) 118, 122, 175
BfoI RGCGCY 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 55, 202
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 133, 181
BseLI CCNNNNNNNGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 55, 202
BspT107I GGYRCC 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 133, 181
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 133, 181
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 203
CviAII CATG 2 cut(s) 10, 172
CviJI RGCY 2 cut(s) 151, 161
CviKI_1 RGCY 2 cut(s) 151, 161
DinI GGCGCC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 13, 175
FaiI YATR 7 cut(s) 11, 114, 119, 135, 173, 219, 227
FatI CATG 2 cut(s) 9, 171
FokI GGATG 2 cut(s) 140, 188
GlaI GCGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 204
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 2 cut(s) 13, 175
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HphI GGTGA 2 cut(s) 43, 83
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 2 cut(s) 13, 175
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 18, 54, 111, 128, 137
MaeIII GTNAC 3 cut(s) 31, 103, 211
MhlI GDGCHC 1 cut(s) 24
Mly113I GGCGCC 1 cut(s) 201
MnlI CCTC 4 cut(s) 80, 151, 178, 202
MseI TTAA 2 cut(s) 165, 268
MwoI GCNNNNNNNGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 201
NcoI CCATGG 1 cut(s) 9
NlaIII CATG 2 cut(s) 13, 175
NlaIV GGNNCC 2 cut(s) 55, 202
NmuCI GTSAC 2 cut(s) 31, 103
PluTI GGCGCC 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 55, 202
SaqAI TTAA 2 cut(s) 165, 268
SduI GDGCHC 1 cut(s) 24
SetI ASST 4 cut(s) 153, 171, 213, 238
SfoI GGCGCC 1 cut(s) 202
SsiI CCGC 1 cut(s) 264
SspDI GGCGCC 1 cut(s) 200
StyI CCWWGG 1 cut(s) 9
Tru1I TTAA 2 cut(s) 165, 268
Tru9I TTAA 2 cut(s) 165, 268
TseFI GTSAC 2 cut(s) 31, 103
Tsp45I GTSAC 2 cut(s) 31, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.