Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000530

Physical Location & Seq

Genomic Coordinates Reverse (-)

32146532 .. 32147462

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCCTGCCATGGGATTTGTGCCCAATGTCGTGACTTTTACTACCATTTTGGGTGGTTATGTGTCGCGGCGCGATATGGTTGGTGCCAAGAGGGTGCTGGTTGGGGCTATTACGGTTATGGATGAGATAGAGGATAGTGGGGTTGGCGCCAATGAGGTCACTTATGGGGTTATGATTGAAGCTTATTGTAAGGAAAAGAAGTCGGGCAAAGCGGTTAATTTGCTTGATGATATGGTGGAGAAGAGGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTTTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGAACTTTGGAAGAGGCTTTTGAAGAAGAATTGCACGCCGGATAATGCGGTATTGGGCACGCTCATATACTGGCTTTGTAAGAAGGGAGAAGTGTGGGAAGCCAGGAGTTTGTTTGATCAGTTTGAGACGAGTGAGCCTCCGGATGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTGAGACAGGGAGGTTATGTGATGACATGGTGGAGAAAGGATATTCTCCGAATTCTTTTACATATAATGTATTGATCAAAGGATTATGTAAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGATGAGATGTTCGAAAAAGGCTATTTGAAAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCGGTAGAGGATGCTGAAATGGCTAGAGTAATATCTATGTCAATATCAAGTGGAGACATTAACAGTGATTTCTGGGATCTTTTCCTTACTAAAGTTGTTGGTGATTTGGATACTGGGGAAAGTGTTCTAGACAGAATACTACTGGAGAATGCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

290

Amino Acids

32.11

Weight (kDa)

4.63

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 64	1.3e-07	PPR repeat family
PPR_1	PF12854	47 - 79	2.8e-06	PPR repeat
PPR_2	PF13041	51 - 87	2.5e-07	PPR repeat family
PPR	PF01535	53 - 82	2.1e-06	PPR repeat
PPR_2	PF13041	154 - 203	3.1e-17	PPR repeat family
PPR_1	PF12854	154 - 183	5e-06	PPR repeat
PPR_3	PF13812	154 - 199	4.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	185 - 217	1.1e-10	PPR repeat
PPR	PF01535	192 - 221	2e-07	PPR repeat
PPR_2	PF13041	194 - 238	1.9e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000530)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca	FvH4_7g08341 FvH4_7g08360
malus_domestica	MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica	Prupe.2G106500_v2.0.a1
pyrus_communis	pycom02g20040
rosa_chinensis	RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata	RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora	Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii	Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa	Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha	Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana	Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 146
AccI	GTMKAC	1 cut(s)	680
AccII	CGCG	2 cut(s)	67, 72
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	3 cut(s)	67, 212, 368
AclWI	GGATC	1 cut(s)	798
AcsI	RAATTY	1 cut(s)	568
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	179, 343, 670
AjnI	CCWGG	1 cut(s)	422
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
AluBI	AGCT	2 cut(s)	182, 258
AluI	AGCT	2 cut(s)	182, 258
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	3 cut(s)	440, 515, 762
AlwI	GGATC	1 cut(s)	798
Aor13HI	TCCGGA	1 cut(s)	460
ApoI	RAATTY	1 cut(s)	568
Asp700I	GAANNNNTTC	1 cut(s)	837
AspLEI	GCGC	3 cut(s)	72, 149, 265
AsuHPI	GGTGA	2 cut(s)	289, 827
AsuII	TTCGAA	1 cut(s)	654
BaeGI	GKGCMC	2 cut(s)	24, 380
BanI	GGYRCC	2 cut(s)	83, 146
BanII	GRGCYC	2 cut(s)	260, 708
Bbv12I	GWGCWC	1 cut(s)	260
BciT130I	CCWGG	1 cut(s)	424
BciVI	GTATCC	1 cut(s)	817
BclI	TGATCA	2 cut(s)	436, 591
BcoDI	GTCTC	3 cut(s)	440, 515, 762
BfaI	CTAG	2 cut(s)	738, 842
BfoI	RGCGCY	2 cut(s)	150, 266
BfuI	GTATCC	1 cut(s)	817
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	85, 148
BmrFI	CCNGG	1 cut(s)	424
BmrI	ACTGGG	1 cut(s)	837
BmsI	GCATC	2 cut(s)	304, 715
BmuI	ACTGGG	1 cut(s)	837
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
Bpu14I	TTCGAA	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 520, 550
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse1I	ACTGG	3 cut(s)	395, 832, 861
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	5 cut(s)	127, 319, 469, 649, 730
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseNI	ACTGG	3 cut(s)	395, 832, 861
BseSI	GKGCMC	2 cut(s)	24, 380
Bsh1236I	CGCG	2 cut(s)	67, 72
BshNI	GGYRCC	2 cut(s)	83, 146
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	359, 461
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	3 cut(s)	440, 515, 762
BsmBI	CGTCTC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	868
Bsp119I	TTCGAA	1 cut(s)	654
Bsp1286I	GDGCHC	4 cut(s)	24, 260, 380, 708
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	436, 591, 790
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	67, 212, 368
BspEI	TCCGGA	1 cut(s)	460
BspFNI	CGCG	2 cut(s)	67, 72
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	85, 148
BspPI	GGATC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	654
BspT107I	GGYRCC	2 cut(s)	83, 146
BsrI	ACTGG	3 cut(s)	395, 832, 861
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	3 cut(s)	436, 591, 790
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	2 cut(s)	115, 779
Bst6I	CTCTTC	2 cut(s)	236, 326
BstACI	GRCGYC	1 cut(s)	147
BstBI	TTCGAA	1 cut(s)	654
BstC8I	GCNNGC	3 cut(s)	6, 356, 380
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	5 cut(s)	127, 319, 469, 649, 730
BstFNI	CGCG	2 cut(s)	67, 72
BstH2I	RGCGCY	2 cut(s)	150, 266
BstHHI	GCGC	3 cut(s)	72, 149, 265
BstKTI	GATC	3 cut(s)	439, 594, 793
BstMAI	GTCTC	3 cut(s)	440, 515, 762
BstMBI	GATC	3 cut(s)	436, 591, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	734
BstNI	CCWGG	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	422
BstSLI	GKGCMC	2 cut(s)	24, 380
BstUI	CGCG	2 cut(s)	67, 72
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuI	GTATCC	1 cut(s)	817
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	5 cut(s)	127, 319, 469, 649, 730
BtsIMutI	CAGTG	1 cut(s)	784
Cac8I	GCNNGC	3 cut(s)	6, 356, 380
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	3 cut(s)	72, 149, 265
CviAII	CATG	3 cut(s)	10, 469, 544
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	3 cut(s)	438, 593, 792
DpnII	GATC	3 cut(s)	436, 591, 790
Eam1104I	CTCTTC	2 cut(s)	236, 326
EarI	CTCTTC	2 cut(s)	236, 326
Ecl136II	GAGCTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	2 cut(s)	260, 708
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	260, 708
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	3 cut(s)	13, 472, 547
FatI	CATG	3 cut(s)	9, 468, 543
FbaI	TGATCA	2 cut(s)	436, 591
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	5 cut(s)	134, 326, 476, 656, 737
FriOI	GRGCYC	2 cut(s)	260, 708
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	2 cut(s)	738, 842
GlaI	GCGC	3 cut(s)	71, 148, 264
GluI	GCNGC	1 cut(s)	68
HaeII	RGCGCY	2 cut(s)	150, 266
HapII	CCGG	2 cut(s)	359, 461
HhaI	GCGC	3 cut(s)	72, 149, 265
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	13, 472, 547
Hin6I	GCGC	3 cut(s)	70, 147, 263
HinP1I	GCGC	3 cut(s)	70, 147, 263
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	1 cut(s)	713
HpaII	CCGG	2 cut(s)	359, 461
HphI	GGTGA	2 cut(s)	289, 827
Hpy166II	GTNNAC	2 cut(s)	323, 681
Hpy188I	TCNGA	1 cut(s)	567
Hpy188III	TCNNGA	5 cut(s)	31, 461, 469, 492, 842
Hpy8I	GTNNAC	2 cut(s)	323, 681
HpyAV	CCTTC	4 cut(s)	293, 298, 397, 616
HpyCH4III	ACNGT	2 cut(s)	115, 779
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	734
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	13, 472, 547
HspAI	GCGC	3 cut(s)	70, 147, 263
KasI	GGCGCC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	460
Ksp22I	TGATCA	2 cut(s)	436, 591
Kzo9I	GATC	3 cut(s)	436, 591, 790
LweI	GCATC	2 cut(s)	304, 715
MaeI	CTAG	2 cut(s)	738, 842
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	3 cut(s)	31, 157, 710
MalI	GATC	3 cut(s)	438, 593, 792
MboI	GATC	3 cut(s)	436, 591, 790
MboII	GAAGA	4 cut(s)	253, 343, 355, 358
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	4 cut(s)	24, 260, 380, 708
MluCI	AATT	4 cut(s)	217, 349, 568, 630
Mly113I	GGCGCC	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	707
MroI	TCCGGA	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	837
MseI	TTAA	2 cut(s)	216, 774
MspI	CCGG	2 cut(s)	359, 461
MspR9I	CCNGG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	2 cut(s)	67, 72
MwoI	GCNNNNNNNGC	1 cut(s)	734
NarI	GGCGCC	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	436, 591, 790
NlaIII	CATG	3 cut(s)	13, 472, 547
NlaIV	GGNNCC	2 cut(s)	85, 148
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	3 cut(s)	31, 157, 710
NspV	TTCGAA	1 cut(s)	654
PagI	TCATGA	1 cut(s)	468
PctI	GAATGC	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	837
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	1 cut(s)	707
PluTI	GGCGCC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	707
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	85, 148
PsuI	RGATCY	1 cut(s)	790
SacI	GAGCTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	216, 774
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	436, 591, 790
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	4 cut(s)	24, 260, 380, 708
SetI	ASST	8 cut(s)	159, 184, 248, 260, 279, 309, 483, 533
SfaNI	GCATC	2 cut(s)	304, 715
SfoI	GGCGCC	1 cut(s)	148
SfuI	TTCGAA	1 cut(s)	654
Sse9I	AATT	4 cut(s)	217, 349, 568, 630
SsiI	CCGC	3 cut(s)	67, 212, 368
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	2 cut(s)	738, 842
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	115, 779
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	654
TasI	AATT	4 cut(s)	217, 349, 568, 630
TauI	GCSGC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	216, 774
Tru9I	TTAA	2 cut(s)	216, 774
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	3 cut(s)	31, 157, 710
Tsp45I	GTSAC	3 cut(s)	31, 157, 710
TspRI	CASTG	1 cut(s)	784
XapI	RAATTY	1 cut(s)	568
XbaI	TCTAGA	1 cut(s)	841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	837
XspI	CTAG	2 cut(s)	738, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.