RLG00000029018

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000530
Physical Location & Seq
Reverse (-)
31582475 .. 31583264
790 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029018

Sequence Viewer

Length: 579 bp
ATGCCTGCCATGGGATTTGTGCCCAATGTGGTGGCTTTTACTACCATTTTGGGTGCCAAGAGAGTGTTTGGTGAGATTTTGGACAGAGGGTGGTTTCCTGATGTGACTACTTATACTATATTGATGGATGGGTATGTGAAGCAGGGGAAGCTTGTTGAGGCTATTAAGGTCATGGATGAGATGGAGGATAATGGGGTTGGCGCCACTTTAGGGAAGGTGGAGGATGCTTGTGTATTGTGGAAGAGGCTTTTGAAGAAGAATTGTACCCCGGATAATGTGGTGTTGGGCACGCTCATATACTGGCTTTGTAAGAAGGAAGAAGTGTGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGACAAGTGAGCCTCCGGATGTCATGACTTACAGCGTGCTTATTTCTGGAATGTGTGATGTGGAGGAGTTGTGTGAGGCAGGGAGGTTGTGGGATGACATGATGGAGAAAGGATGTACTCTGAATTCTTTTACATATAATGTATCTGGGCTCTGTGACTCAGGAGAGGAAGCTGAAATGGCTAGAGTAATATCTATGGCAATGTCAAGTGGAGACATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.46

Weight (kDa)

4.43

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 30 - 62 1.3e-09 PPR repeat
PPR_2 PF13041 33 - 66 8.6e-10 PPR repeat family
PPR PF01535 37 - 66 7.3e-09 PPR repeat
PPR_1 PF12854 86 - 117 5.8e-06 PPR repeat
PPR_2 PF13041 90 - 138 5.3e-08 PPR repeat family
PPR_2 PF13041 124 - 166 1.7e-11 PPR repeat family
PPR_1 PF12854 124 - 152 9.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16420 AT5G16420 AT5G16420 AT5G16420
fragaria_vesca FvH4_7g08341 FvH4_7g08360
malus_domestica MD02G1232100.v1.1 MD07G1081300.v1.1
prunus_persica Prupe.2G106500_v2.0.a1
pyrus_communis pycom02g20040
rosa_chinensis RchiOBHm_Chr1g0340331 RchiOBHm_Chr1g0340431 RchiOBHm_Chr1g0340441 RchiOBHm_Chr1g0340491 RchiOBHm_Chr1g0340531 RchiOBHm_Chr1g0340541 RchiOBHm_Chr1g0340561 RchiOBHm_Chr1g0340621 RchiOBHm_Chr1g0340661 RchiOBHm_Chr1g0340691
rosa_laevigata RLG00000029013 RLG00000029018 RLG00000029020 RLG00000029024 RLG00000029026 RLG00000029029 RLG00000029030 RLG00000029032 RLG00000029033
rosa_multiflora Rmu_sc0000566.1_g000026 Rmu_sc0000566.1_g000034 Rmu_sc0000566.1_g000054 Rmu_sc0001836.1_g000016 Rmu_sc0001836.1_g000022 Rmu_sc0001836.1_g000023 Rmu_sc0001836.1_g000028 Rmu_sc0001836.1_g000058 Rmu_sc0001946.1_g000004 Rmu_sc0002595.1_g000001 Rmu_sc0002595.1_g000005 Rmu_sc0005167.1_g000003 Rmu_sc0005167.1_g000009 Rmu_sc0005167.1_g000018 Rmu_sc0024761.1_g000004
rosa_roxburghii Rroxscaffold_4G00311170 Rroxscaffold_4G00311190 Rroxscaffold_4G00311250 Rroxscaffold_4G00315930 Rroxscaffold_4G00315960 Rroxscaffold_5G00353270
rosa_rugosa Rorug01G0162000.1 Rorug01G0162500.1 Rorug01G0162800.1 Rorug01G0163000.1 Rorug01G0163400.1 Rorug01G0163700.1 Rorug01G0164100.1 Rorug01G0164300 Rorug05G0484800
rosa_samantha Rh1AG177800 Rh1AG178000 Rh1AG178300 Rh1AG178600 Rh1AG178900 Rh1BG145300 Rh1BG145600 Rh1BG145800 Rh1BG145900 Rh1BG146000 Rh1BG146700 Rh1CG165100 Rh1CG165200 Rh1CG165400 Rh1CG165600 Rh1CG165700 Rh1CG165900 Rh1DG177500 Rh1DG177600 Rh1DG177800 Rh1DG177900 Rh1DG178000 Rh1DG178800
rosa_wichuraiana Rw0G006210 Rw1G014800 Rw1G014890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 53, 200
AccIII TCCGGA 1 cut(s) 370
AcsI RAATTY 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 2 cut(s) 265, 472
AfiI CCNNNNNNNGG 2 cut(s) 11, 210
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 2 cut(s) 151, 527
AluI AGCT 2 cut(s) 151, 527
Alw26I GTCTC 2 cut(s) 350, 561
Aor13HI TCCGGA 1 cut(s) 370
ApoI RAATTY 1 cut(s) 478
AspLEI GCGC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 83
BaeGI GKGCMC 2 cut(s) 24, 290
BanI GGYRCC 2 cut(s) 53, 200
BanII GRGCYC 1 cut(s) 507
BccI CCATC 4 cut(s) 118, 122, 175, 451
BciT130I CCWGG 1 cut(s) 334
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 350, 561
BfaI CTAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 204
Bme1390I CCNGG 2 cut(s) 269, 334
BmiI GGNNCC 2 cut(s) 55, 202
BmrFI CCNGG 2 cut(s) 269, 334
BmsI GCATC 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 9, 267
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 210
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 9, 267
BseGI GGATG 6 cut(s) 133, 181, 229, 379, 454, 473
BseLI CCNNNNNNNGG 2 cut(s) 11, 210
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 2 cut(s) 24, 290
BshNI GGYRCC 2 cut(s) 53, 200
BsiSI CCGG 2 cut(s) 269, 371
BslI CCNNNNNNNGG 2 cut(s) 11, 210
BsmAI GTCTC 2 cut(s) 350, 561
Bsp1286I GDGCHC 3 cut(s) 24, 290, 507
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 527
BspEI TCCGGA 1 cut(s) 370
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 55, 202
BspT107I GGYRCC 2 cut(s) 53, 200
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 9, 267
BssMI GATC 1 cut(s) 346
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 3 cut(s) 6, 290, 392
BstDEI CTNAG 1 cut(s) 514
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 6 cut(s) 133, 181, 229, 379, 454, 473
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 350, 561
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 148, 533
BstNI CCWGG 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 267, 332
BstSLI GKGCMC 2 cut(s) 24, 290
BstXI CCANNNNNNTGG 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 6 cut(s) 133, 181, 229, 379, 454, 473
Cac8I GCNNGC 3 cut(s) 6, 290, 392
CciI TCATGA 1 cut(s) 378
CfoI GCGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 264, 471
CviAII CATG 4 cut(s) 10, 172, 379, 454
CviQI GTAC 2 cut(s) 264, 471
DdeI CTNAG 1 cut(s) 514
DinI GGCGCC 1 cut(s) 202
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 507
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 13, 175, 382, 457
FatI CATG 4 cut(s) 9, 171, 378, 453
FbaI TGATCA 1 cut(s) 346
FokI GGATG 6 cut(s) 140, 188, 236, 386, 461, 480
FriOI GRGCYC 1 cut(s) 507
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 204
HapII CCGG 2 cut(s) 269, 371
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 4 cut(s) 13, 175, 382, 457
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 1 cut(s) 512
HpaII CCGG 2 cut(s) 269, 371
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 5 cut(s) 98, 371, 379, 402, 516
HpyAV CCTTC 2 cut(s) 208, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 533
HpyF3I CTNAG 1 cut(s) 514
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 4 cut(s) 13, 175, 382, 457
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 1 cut(s) 346
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 103, 509
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 4 cut(s) 253, 265, 268, 329
MhlI GDGCHC 3 cut(s) 24, 290, 507
MluCI AATT 3 cut(s) 259, 338, 478
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 1 cut(s) 506
MroI TCCGGA 1 cut(s) 370
MseI TTAA 1 cut(s) 165
MspI CCGG 2 cut(s) 269, 371
MspR9I CCNGG 2 cut(s) 269, 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 148, 533
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 1 cut(s) 269
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 346
NlaIII CATG 4 cut(s) 13, 175, 382, 457
NlaIV GGNNCC 2 cut(s) 55, 202
NmuCI GTSAC 2 cut(s) 103, 509
PagI TCATGA 1 cut(s) 378
PleI GAGTC 1 cut(s) 506
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 55, 202
RsaI GTAC 2 cut(s) 265, 472
RsaNI GTAC 2 cut(s) 264, 471
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 1 cut(s) 346
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 269, 334
SduI GDGCHC 3 cut(s) 24, 290, 507
SetI ASST 5 cut(s) 153, 171, 219, 443, 529
SfaNI GCATC 1 cut(s) 214
SfoI GGCGCC 1 cut(s) 202
Sse9I AATT 3 cut(s) 259, 338, 478
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 267, 332
StyI CCWWGG 1 cut(s) 9
TasI AATT 3 cut(s) 259, 338, 478
TatI WGTACW 1 cut(s) 470
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 2 cut(s) 103, 509
Tsp45I GTSAC 2 cut(s) 103, 509
XapI RAATTY 1 cut(s) 478
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.