Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

41243466 .. 41243862

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1335200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGATTGTACATTACAATGTATGCGCCCTGAATGGGAACCGTACCATGGATCATGAGCTTGAAGATATACCCGCTGAGATACAGAGGGACTGGCGGAGGAGTCGCTCCAGTTTCAAACTAGCCAATCTCATAGTTACTGAAGCATACTTGACATTCACAAAAGCGCTGGGTTCGGCTGGAACATTTCTCCTCTTTGCCGGGTTTTCTCTCATTGGACTCATATTTATTTACTTCCTAGTCCCTGAAACCAAAGGAATGCGGTTTGAAGAGGTTGAGAAGTTGCTGCAGAAAGGCTTCAGACCCAAGCTATTTGCTCCCAAGGACACCAAGGCAAAGCTAAACTTGAGGAATAATATGTCTAGATCGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

125

Amino Acids

14.18

Weight (kDa)

9.59

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	40 - 95	2.6e-11	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	75, 97, 262
AclWI	GGATC	1 cut(s)	60
AcuI	CTGAAG	2 cut(s)	162, 283
AfaI	GTAC	2 cut(s)	12, 46
AfeI	AGCGCT	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	36, 49
AgsI	TTSAA	3 cut(s)	65, 118, 269
AluBI	AGCT	3 cut(s)	61, 310, 340
AluI	AGCT	3 cut(s)	61, 310, 340
AlwI	GGATC	1 cut(s)	60
Aor51HI	AGCGCT	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	29, 169
AsuC2I	CCSGG	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	202
BfaI	CTAG	3 cut(s)	122, 239, 363
BfmI	CTRYAG	1 cut(s)	287
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	48, 321, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 49
Bse1I	ACTGG	2 cut(s)	98, 111
BseDI	CCNNGG	3 cut(s)	48, 321, 330
BseLI	CCNNNNNNNGG	2 cut(s)	36, 49
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	98, 111
BseRI	GAGGAG	2 cut(s)	115, 182
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	104, 227
BslI	CCNNNNNNNGG	2 cut(s)	36, 49
BsmFI	GGGAC	2 cut(s)	104, 227
BsmI	GAATGC	1 cut(s)	264
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	2 cut(s)	52, 365
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	3 cut(s)	75, 97, 262
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	291
BspPI	GGATC	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	98, 111
BssECI	CCNNGG	3 cut(s)	48, 321, 330
BssMI	GATC	2 cut(s)	52, 365
BssT1I	CCWWGG	3 cut(s)	48, 321, 330
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	29, 169
BstKTI	GATC	2 cut(s)	55, 368
BstMBI	GATC	2 cut(s)	52, 365
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	48
CciI	TCATGA	1 cut(s)	55
CfoI	GCGC	2 cut(s)	29, 169
Csp6I	GTAC	2 cut(s)	11, 45
CviAII	CATG	2 cut(s)	49, 56
CviJI	RGCY	6 cut(s)	61, 125, 179, 297, 310, 340
CviKI_1	RGCY	6 cut(s)	61, 125, 179, 297, 310, 340
CviQI	GTAC	2 cut(s)	11, 45
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	54, 367
DpnII	GATC	2 cut(s)	52, 365
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	112
Eco130I	CCWWGG	3 cut(s)	48, 321, 330
Eco47III	AGCGCT	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	162, 283
EcoT14I	CCWWGG	3 cut(s)	48, 321, 330
ErhI	CCWWGG	3 cut(s)	48, 321, 330
FaeI	CATG	2 cut(s)	52, 59
FaiI	YATR	8 cut(s)	25, 50, 57, 71, 134, 148, 224, 359
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	2 cut(s)	104, 227
FatI	CATG	2 cut(s)	48, 55
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	3 cut(s)	122, 239, 363
GlaI	GCGC	2 cut(s)	28, 168
GluI	GCNGC	1 cut(s)	287
GsaI	CCCAGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	170
HapII	CCGG	1 cut(s)	201
HhaI	GCGC	2 cut(s)	29, 169
Hin1II	CATG	2 cut(s)	52, 59
Hin6I	GCGC	2 cut(s)	27, 167
HinP1I	GCGC	2 cut(s)	27, 167
HinfI	GANTC	2 cut(s)	103, 219
HpaII	CCGG	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	2 cut(s)	56, 363
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	289
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	52, 59
HspAI	GCGC	2 cut(s)	27, 167
Kzo9I	GATC	2 cut(s)	52, 365
LmnI	GCTCC	2 cut(s)	113, 322
LpnPI	CCDG	7 cut(s)	44, 79, 124, 155, 165, 214, 258
Lsp1109I	GCAGC	1 cut(s)	273
MaeI	CTAG	3 cut(s)	122, 239, 363
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	54, 367
MboI	GATC	2 cut(s)	52, 365
MboII	GAAGA	2 cut(s)	77, 281
MlyI	GAGTC	2 cut(s)	112, 213
MnlI	CCTC	5 cut(s)	81, 93, 203, 265, 342
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	52, 365
NlaIII	CATG	2 cut(s)	52, 59
NlaIV	GGNNCC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	55
PctI	GAATGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	2 cut(s)	111, 213
PpsI	GAGTC	2 cut(s)	111, 213
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	12, 46
RsaNI	GTAC	2 cut(s)	11, 45
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	373
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	2 cut(s)	52, 365
SchI	GAGTC	2 cut(s)	112, 213
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	4 cut(s)	63, 276, 312, 342
SfcI	CTRYAG	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SsiI	CCGC	3 cut(s)	75, 97, 262
SspMI	CTAG	3 cut(s)	122, 239, 363
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	3 cut(s)	48, 321, 330
TaaI	ACNGT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	373
Tru9I	TTAA	1 cut(s)	373
TseI	GCWGC	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	3 cut(s)	122, 239, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.