RLG00000031982

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
10001116 .. 10003023
1908 bp
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UTR
Exon/CDS
Intron
RLM00000031982

Sequence Viewer

Length: 381 bp
ATGACGCGGGTATTGTTCGGTTTTGCTGTGAGGAGGAAGAGGACCTGCGTTTTGAGCCAAGGAGAAGATGAGGGATTTGGTGGTTCTTCTATTTACACTGCTGGTGCTGAAGGGATGATTTGTGAAATCGATTCACTGACAGCAAAGGGTAGATTTTCTGATGGCCCTCTTGATTTCTTATCTGACTGGAAATTTACAGCTGCCTTCGACATTTTATATCTCTGTATTCGTAGTTTTATAGAAACTGAGGAGTTGTTTGTAGAAGTTGAATTGTGTGCAAGAGGCACAGATGTCAACACAAACTACTCTCTAACTACTTCGCATCCTTGCTTTGTATTTCAGTCAAGGGAGATTAGAGTTGCTTGGAGAATGGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.22

Weight (kDa)

4.86

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 53
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 191
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 2 cut(s) 200, 378
AluI AGCT 2 cut(s) 200, 378
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspS9I GGNCC 2 cut(s) 42, 164
AvaII GGWCC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 42, 164
BmsI GCATC 1 cut(s) 331
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 120, 322
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 2 cut(s) 46, 263
BseXI GCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 129
BsnI GGCC 1 cut(s) 165
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 120, 322
BstFNI CGCG 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 2 cut(s) 120, 322
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 134
BveI ACCTGC 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 42, 164
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 13
CviJI RGCY 4 cut(s) 57, 165, 200, 378
CviKI_1 RGCY 4 cut(s) 57, 165, 200, 378
DdeI CTNAG 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 2 cut(s) 217, 239
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 2 cut(s) 127, 309
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 165
HgaI GACGC 1 cut(s) 13
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 160, 184
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 104, 214
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 1 cut(s) 246
LpnPI CCDG 3 cut(s) 58, 87, 172
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 331
MboII GAAGA 3 cut(s) 49, 77, 78
MluCI AATT 2 cut(s) 191, 269
MnlI CCTC 7 cut(s) 24, 27, 33, 64, 177, 241, 275
MspA1I CMGCKG 1 cut(s) 200
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 42
PspPI GGNCC 2 cut(s) 42, 164
PspPPI RGGWCCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 200
SatI GCNGC 1 cut(s) 201
Sau96I GGNCC 2 cut(s) 42, 164
SetI ASST 3 cut(s) 47, 202, 380
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 42
Sse9I AATT 2 cut(s) 191, 269
SsiI CCGC 1 cut(s) 7
StyI CCWWGG 1 cut(s) 58
TaqI TCGA 2 cut(s) 129, 207
TasI AATT 2 cut(s) 191, 269
TfiI GAWTC 1 cut(s) 131
TscAI CASTG 2 cut(s) 103, 141
TseI GCWGC 1 cut(s) 200
TspRI CASTG 2 cut(s) 103, 141
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.