Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

48512291 .. 48513399

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAACCGCATGACATGCTTGAAATCAACAGATTGCGCCTTCGTGCTAGTAATGTTGATAATTTGGCCCCAGGAGTCAATGCCATGAAGAACATAGGGTATGGTACTCTAAAGGGTGTCCTAGCAAAATTGGTATCTTTGCGGTCATTTTGTTGGGATTGTACATCATTATGTATGCACTGGAATGGGAACTATTCCTTGGATTGTGAACTCGAGAGATATATATACCCATTGAGATACAGAGGCACTAGTGGAGGGATTGCTGCAGTTTCCAACTGGACCGCAAATCTCATTGTGAGTGAGACATACTTAACCCTCACTAAGGAACCGGATGGAGAGCGCGAATGCCTTGATAAAGTAATGGGAACTATTCCTTGGATTGTGAATTCAAAGATATACCCATTGAGCTACAGAGGCACCGGTGGAGGGATATCCGTAGTTTCCAACCTGACCGCAAATCTCATTGTGAGTGAGACATACTTAAACCTTACTAAGGAACCGGGTTTGGCTCGAACCTTCCTCCTATTTGCCGGGTTTTCTACCATTGGACTTGTATTCATTTACTTACGGTTCCCGAAACTAAAGGAATGTGTACATACCTCCACTAATATGGAGGAGTTGCTACATCAACAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

212

Amino Acids

23.71

Weight (kDa)

7.6

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	121 - 196	7.9e-11	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccII	CGCG	1 cut(s)	342
AciI	CCGC	4 cut(s)	8, 142, 282, 453
AcsI	RAATTY	1 cut(s)	385
AfaI	GTAC	3 cut(s)	106, 163, 594
AfiI	CCNNNNNNNGG	3 cut(s)	322, 426, 493
AgeI	ACCGGT	1 cut(s)	419
AgsI	TTSAA	2 cut(s)	23, 390
AhlI	ACTAGT	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	4 cut(s)	182, 214, 358, 390
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	296, 467
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	385
AsiGI	ACCGGT	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	39, 342
AspS9I	GGNCC	2 cut(s)	67, 279
AsuC2I	CCSGG	2 cut(s)	501, 532
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	72
BcnI	CCSGG	2 cut(s)	501, 532
BcoDI	GTCTC	2 cut(s)	296, 467
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	3 cut(s)	48, 122, 249
BfmI	CTRYAG	2 cut(s)	264, 409
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	3 cut(s)	72, 501, 532
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	67, 279
BmiI	GGNNCC	6 cut(s)	6, 69, 327, 418, 498, 572
BmrFI	CCNGG	3 cut(s)	72, 501, 532
BpuMI	CCSGG	2 cut(s)	501, 532
BsaJI	CCNNGG	3 cut(s)	70, 198, 374
BsaWI	WCCGGW	2 cut(s)	328, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 426, 493
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	185, 281
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	70, 198, 374
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	3 cut(s)	322, 426, 493
BseNI	ACTGG	2 cut(s)	185, 281
BseRI	GAGGAG	1 cut(s)	629
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	416
BshTI	ACCGGT	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	4 cut(s)	329, 420, 500, 531
BslI	CCNNNNNNNGG	3 cut(s)	322, 426, 493
BsmAI	GTCTC	2 cut(s)	296, 467
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	212
Bsp1407I	TGTACA	2 cut(s)	161, 592
BspACI	CCGC	4 cut(s)	8, 142, 282, 453
BspANI	GGCC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	6 cut(s)	6, 69, 327, 418, 498, 572
BspMAI	CTGCAG	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	419
BsrGI	TGTACA	2 cut(s)	161, 592
BsrI	ACTGG	2 cut(s)	185, 281
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	70, 198, 374
BssT1I	CCWWGG	2 cut(s)	198, 374
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstAUI	TGTACA	2 cut(s)	161, 592
BstDEI	CTNAG	2 cut(s)	321, 492
BstENI	CCTNNNNNAGG	2 cut(s)	320, 491
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	39, 342
BstMAI	GTCTC	2 cut(s)	296, 467
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 414
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	19
BstSCI	CCNGG	3 cut(s)	70, 499, 530
BstSFI	CTRYAG	2 cut(s)	264, 409
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	178
CfoI	GCGC	2 cut(s)	39, 342
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	67, 279
Csp6I	GTAC	3 cut(s)	105, 162, 593
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	3 cut(s)	11, 16, 85
CviJI	RGCY	3 cut(s)	68, 408, 509
CviKI_1	RGCY	3 cut(s)	68, 408, 509
CviQI	GTAC	3 cut(s)	105, 162, 593
DdeI	CTNAG	2 cut(s)	321, 492
Eco130I	CCWWGG	2 cut(s)	198, 374
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	2 cut(s)	320, 491
EcoRI	GAATTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	70
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	198, 374
ErhI	CCWWGG	2 cut(s)	198, 374
FaeI	CATG	3 cut(s)	14, 19, 88
FatI	CATG	3 cut(s)	10, 15, 84
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	3 cut(s)	48, 122, 249
GlaI	GCGC	2 cut(s)	38, 341
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	4 cut(s)	329, 420, 500, 531
HhaI	GCGC	2 cut(s)	39, 342
Hin1II	CATG	3 cut(s)	14, 19, 88
Hin6I	GCGC	2 cut(s)	37, 340
HinP1I	GCGC	2 cut(s)	37, 340
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	4 cut(s)	329, 420, 500, 531
Hpy166II	GTNNAC	2 cut(s)	209, 593
Hpy188III	TCNNGA	2 cut(s)	214, 574
Hpy8I	GTNNAC	2 cut(s)	209, 593
HpyAV	CCTTC	2 cut(s)	50, 526
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	178, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 414
HpyF3I	CTNAG	2 cut(s)	321, 492
Hsp92II	CATG	3 cut(s)	14, 19, 88
HspAI	GCGC	2 cut(s)	37, 340
LpnPI	CCDG	9 cut(s)	57, 84, 166, 262, 342, 433, 461, 513, 544
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	3 cut(s)	48, 122, 249
MboII	GAAGA	1 cut(s)	100
MluCI	AATT	3 cut(s)	61, 128, 385
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	297, 468
MnlI	CCTC	8 cut(s)	236, 248, 326, 407, 419, 530, 607, 610
MseI	TTAA	2 cut(s)	311, 482
MslI	CAYNNNNRTG	3 cut(s)	169, 183, 608
MspI	CCGG	4 cut(s)	329, 420, 500, 531
MspR9I	CCNGG	3 cut(s)	72, 501, 532
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	16, 414
NciI	CCSGG	2 cut(s)	501, 532
NlaIII	CATG	3 cut(s)	14, 19, 88
NlaIV	GGNNCC	6 cut(s)	6, 69, 327, 418, 498, 572
NspI	RCATGY	1 cut(s)	19
PaeR7I	CTCGAG	1 cut(s)	212
PctI	GAATGC	1 cut(s)	350
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	6 cut(s)	6, 69, 327, 418, 498, 572
PspPI	GGNCC	2 cut(s)	67, 279
PstI	CTGCAG	1 cut(s)	268
RsaI	GTAC	3 cut(s)	106, 163, 594
RsaNI	GTAC	3 cut(s)	105, 162, 593
RseI	CAYNNNNRTG	3 cut(s)	169, 183, 608
SaqAI	TTAA	2 cut(s)	311, 482
SatI	GCNGC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	67, 279
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	3 cut(s)	72, 501, 532
SetI	ASST	5 cut(s)	410, 450, 489, 518, 602
SfcI	CTRYAG	2 cut(s)	264, 409
Sfr274I	CTCGAG	1 cut(s)	212
SgrAI	CRCCGGYG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	3 cut(s)	169, 183, 608
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	3 cut(s)	61, 128, 385
SsiI	CCGC	4 cut(s)	8, 142, 282, 453
SspMI	CTAG	3 cut(s)	48, 122, 249
StyD4I	CCNGG	3 cut(s)	70, 499, 530
StyI	CCWWGG	2 cut(s)	198, 374
TaaI	ACNGT	1 cut(s)	570
TaqI	TCGA	2 cut(s)	213, 511
TasI	AATT	3 cut(s)	61, 128, 385
TatI	WGTACW	2 cut(s)	161, 592
Tru1I	TTAA	2 cut(s)	311, 482
Tru9I	TTAA	2 cut(s)	311, 482
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	101, 547
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	279
XagI	CCTNNNNNAGG	2 cut(s)	320, 491
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	19
XhoI	CTCGAG	1 cut(s)	212
XspI	CTAG	3 cut(s)	48, 122, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.