Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

61727233 .. 61727586

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG342700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTTCGAATGATGGCTTGAAAAAGGCATGTGGTGGAGAACACCGTGCATGGTACACAAAAGGGTGTCTAAGCAAAGTTGGATTCTCTGCAGTAATCCTTTTGGAATTGTACATCATTATCTACGCCCGTGGAATGGGAACCATACCGTGGATTGTCAACTCAGAGATATACCCTTTGAGATACAGAGGCACATGTGGAAGAATTGCTGCAGTGTCTAATTGGAGTGCCAATCTGATTGTGAGTGAGACATTTTTATCCCTCACTCATGCTTTGGTTCTGGAGGCACGTTCCTCCGCTCTTTGCTGGGTTTTCTCTCATTGGACTAGTATTCATTGTCTTCTTGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

117

Amino Acids

12.89

Weight (kDa)

8.93

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	26 - 93	9.7e-13	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	150
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	1 cut(s)	297
AfaI	GTAC	2 cut(s)	56, 113
AfiI	CCNNNNNNNGG	2 cut(s)	136, 150
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	22
AhlI	ACTAGT	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	242
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	90, 210
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	142, 349
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	130, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 150
BseDI	CCNNGG	2 cut(s)	130, 149
BseLI	CCNNNNNNNGG	2 cut(s)	136, 150
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	136, 150
BsmAI	GTCTC	1 cut(s)	242
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	111
BspACI	CCGC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	142, 349
BspMAI	CTGCAG	2 cut(s)	94, 214
BspT104I	TTCGAA	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	130, 149
Bst4CI	ACNGT	2 cut(s)	47, 150
BstAUI	TGTACA	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	71, 163
BstDSI	CCRYGG	2 cut(s)	130, 149
BstMAI	GTCTC	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	33, 198
BstSFI	CTRYAG	2 cut(s)	90, 210
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	332
BtgI	CCRYGG	2 cut(s)	130, 149
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	55, 112
CviAII	CATG	4 cut(s)	30, 51, 195, 269
CviJI	RGCY	2 cut(s)	5, 18
CviKI_1	RGCY	2 cut(s)	5, 18
CviQI	GTAC	2 cut(s)	55, 112
DdeI	CTNAG	2 cut(s)	71, 163
FaeI	CATG	4 cut(s)	33, 54, 198, 272
FaiI	YATR	6 cut(s)	31, 52, 146, 172, 196, 270
FatI	CATG	4 cut(s)	29, 50, 194, 268
Fnu4HI	GCNGC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	302
Hin1II	CATG	4 cut(s)	33, 54, 198, 272
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	84
Hpy166II	GTNNAC	2 cut(s)	57, 160
Hpy188I	TCNGA	2 cut(s)	166, 237
Hpy188III	TCNNGA	2 cut(s)	281, 351
Hpy8I	GTNNAC	2 cut(s)	57, 160
HpyCH4III	ACNGT	2 cut(s)	47, 150
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	3 cut(s)	50, 92, 212
HpyF3I	CTNAG	2 cut(s)	71, 163
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	4 cut(s)	33, 54, 198, 272
LpnPI	CCDG	2 cut(s)	266, 292
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	289
MbiI	CCGCTC	1 cut(s)	299
MboII	GAAGA	2 cut(s)	213, 332
MluCI	AATT	3 cut(s)	107, 204, 220
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	182, 272, 277, 304
NlaIII	CATG	4 cut(s)	33, 54, 198, 272
NlaIV	GGNNCC	2 cut(s)	142, 349
NspI	RCATGY	2 cut(s)	33, 198
NspV	TTCGAA	1 cut(s)	8
PciI	ACATGT	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	142, 349
PstI	CTGCAG	2 cut(s)	94, 214
RsaI	GTAC	2 cut(s)	56, 113
RsaNI	GTAC	2 cut(s)	55, 112
SatI	GCNGC	1 cut(s)	210
SetI	ASST	1 cut(s)	292
SfcI	CTRYAG	2 cut(s)	90, 210
SfuI	TTCGAA	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	3 cut(s)	107, 204, 220
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	47, 150
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	1 cut(s)	8
TasI	AATT	3 cut(s)	107, 204, 220
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	150
XceI	RCATGY	2 cut(s)	33, 198
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.