Prupe.8G166200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000977
Physical Location & Seq
Reverse (-)
17232261 .. 17233427
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G166200.1

Sequence Viewer

Length: 1167 bp
ATGGAGAATGATGGACCAAAAGAAAATTTAGAAAATCACCAAGAATCAGCAAAAGAAGAAAATAACAAATGGGAAGAGGATTTGGTGGAAGCTGATGACCAATTGAAGGAAAAGTCAGAAGTTGAAGAAGGGGCAGTAAAAGATGAAAATAACCTATGGGAAGAGTATTTGGTGGAAGCTCATGACCATTTGGAAGAAAAATCTGAAGTTGATCACCGAGAAGCAGCAAAAGAACGGGAACGTTTGATTTTGCCAGAATTGGGAAGTTTTTTGAACTGGAAAGAACGGAGGAAAGCTGATGAAGTTTCTAATCTCAGTGGCAATGGGAGCAGTGAGATTGAGAATGAACTGAAAGCTGAAAATGTAAGAATCTATACTGAGGAGGAACTTGTGGACATTGATGTTGTTGAGAGATTAAAGGCTGAAAATAGTATTTTGAAGAGAGAAAAGGAATTTTTGGAGGAGTCAGAGAGACTTTTATATAAAGATTCTCTCCATGTGTGGGAAATGCATAATCAAAAGCTTAATGCAATGCGTTTTGAAGCGAATCGGGAGTCTGAAACTTTGTTTGGTGAGCTAGAGAAGCACTTCAAGTTAGAGAAAGACATGCTGGCAAGGCTTTACGCTTACGAAGAAGATAAGAACAAATGGGAGCAAGAGAAGAGAGAAATTGCCGAAAAACTTGAAGCTCTAACTGCAGCTTTCGAAAAAAACCAAGGTACTGTGCAAAATGGCACAGAAGATCTAACAAAAAGATGGGAAGATGAGAAAACTGAACTAACTCAACAGCTTTCTGCAGCAAATTCTTGGTACCAATACTATTATCAAGTTGCGATGCATAATGAAGAAATTGTCCTCAAGTTGGAGCAAGAGAGGAACAATCTTTCTGCAAAGCTTTGTGCTGCAACACAGTGCTCTGATTATTACAGAGCTTGTTTTCGTGACTGTGAAGAAAACTCCCTCAGGTTTATGGAAAAAAACGATGAGCTTGCTAGAAAGCTTCGGGATGAAACTATTTTGGCTAGTTCCTATCATAACCGTGTTTATGAGCTTGAAGACAAATGTCGGATGCTCGAGGAAGCCAAAACCAATCTCACTGCAAAGCTTTGTGCTGCCAATGCTTCCTCTGAACTATATCGAAGCATGTTGCATGATGCAGGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

45.81

Weight (kDa)

4.74

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 810
AccB1I GGYRCC 1 cut(s) 810
AclI AACGTT 1 cut(s) 241
AcsI RAATTY 3 cut(s) 25, 452, 802
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 2 cut(s) 721, 812
AfiI CCNNNNNNNGG 4 cut(s) 106, 260, 502, 862
AgsI TTSAA 8 cut(s) 106, 125, 274, 439, 542, 592, 686, 1055
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
Alw21I GWGCWC 1 cut(s) 917
Alw26I GTCTC 1 cut(s) 466
Ama87I CYCGRG 1 cut(s) 1073
ApeKI GCWGC 5 cut(s) 224, 698, 797, 902, 1112
ApoI RAATTY 3 cut(s) 25, 452, 802
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
Asp700I GAANNNNTTC 1 cut(s) 587
Asp718I GGTACC 1 cut(s) 810
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 29, 206, 584
AsuII TTCGAA 1 cut(s) 705
AvaI CYCGRG 1 cut(s) 1073
AvaII GGWCC 1 cut(s) 14
AxyI CCTNAGG 1 cut(s) 962
BanI GGYRCC 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 1062
Bbv12I GWGCWC 1 cut(s) 917
BbvI GCAGC 5 cut(s) 236, 710, 809, 889, 1099
BccI CCATC 2 cut(s) 5, 750
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 3 cut(s) 578, 993, 1023
BfmI CTRYAG 2 cut(s) 696, 795
BglII AGATCT 1 cut(s) 742
BisI GCNGC 5 cut(s) 225, 699, 798, 903, 1113
BlsI GCNGC 5 cut(s) 226, 700, 799, 904, 1114
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 1073
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 812
BmsI GCATC 3 cut(s) 825, 1059, 1144
BoxI GACNNNNGTC 1 cut(s) 1062
BpiI GAAGAC 1 cut(s) 1062
Bpu14I TTCGAA 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 842
BsaJI CCNNGG 1 cut(s) 715
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 260, 502, 862
Bse1I ACTGG 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 962
Bse3DI GCAATG 2 cut(s) 328, 537
BseDI CCNNGG 1 cut(s) 715
BseGI GGATG 2 cut(s) 1012, 1074
BseLI CCNNNNNNNGG 4 cut(s) 106, 260, 502, 862
BseMI GCAATG 2 cut(s) 328, 537
BseMII CTCAG 3 cut(s) 328, 369, 976
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 2 cut(s) 395, 476
BseXI GCAGC 5 cut(s) 236, 710, 809, 889, 1099
BshNI GGYRCC 1 cut(s) 810
BsiHKAI GWGCWC 1 cut(s) 917
BsiHKCI CYCGRG 1 cut(s) 1073
BslI CCNNNNNNNGG 4 cut(s) 106, 260, 502, 862
BsmAI GTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 1073
Bsp119I TTCGAA 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 917
Bsp143I GATC 2 cut(s) 211, 742
BspCNI CTCAG 3 cut(s) 327, 370, 975
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 812
BspMAI CTGCAG 2 cut(s) 700, 799
BspT104I TTCGAA 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 810
BsrDI GCAATG 2 cut(s) 328, 537
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 715
BssMI GATC 2 cut(s) 211, 742
BssT1I CCWWGG 1 cut(s) 715
Bst4CI ACNGT 4 cut(s) 724, 912, 947, 1040
Bst6I CTCTTC 4 cut(s) 69, 156, 434, 656
BstBI TTCGAA 1 cut(s) 705
BstC8I GCNNGC 3 cut(s) 612, 990, 1159
BstDEI CTNAG 3 cut(s) 314, 378, 962
BstF5I GGATG 2 cut(s) 1012, 1074
BstKTI GATC 2 cut(s) 214, 745
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 2 cut(s) 211, 742
BstMWI GCNNNNNNNGC 5 cut(s) 327, 583, 616, 695, 1118
BstNSI RCATGY 2 cut(s) 610, 1147
BstPAI GACNNNNGTC 1 cut(s) 1062
BstSFI CTRYAG 2 cut(s) 696, 795
BstV1I GCAGC 5 cut(s) 236, 710, 809, 889, 1099
BstV2I GAAGAC 1 cut(s) 1062
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
Bsu36I CCTNAGG 1 cut(s) 962
BtgZI GCGATG 1 cut(s) 848
BtsCI GGATG 2 cut(s) 1012, 1074
BtsI GCAGTG 2 cut(s) 337, 1095
BtsIMutI CAGTG 4 cut(s) 322, 337, 917, 1095
Cac8I GCNNGC 3 cut(s) 612, 990, 1159
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 720, 811
CviAII CATG 5 cut(s) 182, 497, 607, 1144, 1151
CviQI GTAC 2 cut(s) 720, 811
DdeI CTNAG 3 cut(s) 314, 378, 962
DpnI GATC 2 cut(s) 213, 744
DpnII GATC 2 cut(s) 211, 742
Eam1104I CTCTTC 4 cut(s) 69, 156, 434, 656
EarI CTCTTC 4 cut(s) 69, 156, 434, 656
Eco130I CCWWGG 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 962
Eco88I CYCGRG 1 cut(s) 1073
EcoT14I CCWWGG 1 cut(s) 715
EcoT22I ATGCAT 2 cut(s) 513, 840
ErhI CCWWGG 1 cut(s) 715
FaeI CATG 5 cut(s) 185, 500, 610, 1147, 1154
FatI CATG 5 cut(s) 181, 496, 606, 1143, 1150
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 5 cut(s) 225, 699, 798, 903, 1113
FokI GGATG 2 cut(s) 1019, 1081
Fsp4HI GCNGC 5 cut(s) 225, 699, 798, 903, 1113
FspBI CTAG 3 cut(s) 578, 993, 1023
GluI GCNGC 5 cut(s) 225, 699, 798, 903, 1113
Hin1II CATG 5 cut(s) 185, 500, 610, 1147, 1154
HindIII AAGCTT 4 cut(s) 521, 893, 998, 1103
HinfI GANTC 6 cut(s) 44, 369, 464, 488, 547, 554
HphI GGTGA 3 cut(s) 29, 206, 584
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 7 cut(s) 118, 205, 469, 559, 919, 1068, 1129
Hpy188III TCNNGA 4 cut(s) 182, 551, 941, 1004
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 100, 122
HpyCH4III ACNGT 4 cut(s) 724, 912, 947, 1040
HpyCH4IV ACGT 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 5 cut(s) 327, 583, 616, 695, 1118
HpyF3I CTNAG 3 cut(s) 314, 378, 962
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 5 cut(s) 185, 500, 610, 1147, 1154
KpnI GGTACC 1 cut(s) 814
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 211, 742
LmnI GCTCC 3 cut(s) 327, 652, 865
LpnPI CCDG 5 cut(s) 262, 267, 596, 949, 1143
Lsp1109I GCAGC 5 cut(s) 236, 710, 809, 889, 1099
LweI GCATC 3 cut(s) 825, 1059, 1144
MaeI CTAG 3 cut(s) 578, 993, 1023
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 941
MalI GATC 2 cut(s) 213, 744
MboI GATC 2 cut(s) 211, 742
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 917
MluCI AATT 7 cut(s) 25, 101, 257, 452, 669, 802, 849
MlyI GAGTC 2 cut(s) 473, 563
MmeI TCCRAC 2 cut(s) 843, 1046
Mph1103I ATGCAT 2 cut(s) 513, 840
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 2 cut(s) 416, 525
MslI CAYNNNNRTG 1 cut(s) 1038
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 5 cut(s) 327, 583, 616, 695, 1118
NdeII GATC 2 cut(s) 211, 742
NlaIII CATG 5 cut(s) 185, 500, 610, 1147, 1154
NlaIV GGNNCC 1 cut(s) 812
NmuCI GTSAC 1 cut(s) 941
NsiI ATGCAT 2 cut(s) 513, 840
NspI RCATGY 2 cut(s) 610, 1147
NspV TTCGAA 1 cut(s) 705
PaeR7I CTCGAG 1 cut(s) 1073
PagI TCATGA 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 4 cut(s) 44, 369, 488, 547
PkrI GCNGC 5 cut(s) 226, 700, 799, 904, 1114
PleI GAGTC 2 cut(s) 472, 562
PpsI GAGTC 2 cut(s) 472, 562
PshAI GACNNNNGTC 1 cut(s) 1062
Psp1406I AACGTT 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 812
PspPI GGNCC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 1073
PstI CTGCAG 2 cut(s) 700, 799
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 2 cut(s) 721, 812
RsaNI GTAC 2 cut(s) 720, 811
RseI CAYNNNNRTG 1 cut(s) 1038
SaqAI TTAA 2 cut(s) 416, 525
SatI GCNGC 5 cut(s) 225, 699, 798, 903, 1113
Sau3AI GATC 2 cut(s) 211, 742
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 473, 563
SduI GDGCHC 1 cut(s) 917
SfaNI GCATC 3 cut(s) 825, 1059, 1144
SfcI CTRYAG 2 cut(s) 696, 795
Sfr274I CTCGAG 1 cut(s) 1073
SfuI TTCGAA 1 cut(s) 705
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 1073
SmiMI CAYNNNNRTG 1 cut(s) 1038
SmlI CTYRAG 2 cut(s) 857, 1073
SmoI CTYRAG 2 cut(s) 857, 1073
Sse9I AATT 7 cut(s) 25, 101, 257, 452, 669, 802, 849
SspMI CTAG 3 cut(s) 578, 993, 1023
StyI CCWWGG 1 cut(s) 715
TaaI ACNGT 4 cut(s) 724, 912, 947, 1040
TaiI ACGT 1 cut(s) 244
TaqI TCGA 3 cut(s) 705, 1074, 1138
TasI AATT 7 cut(s) 25, 101, 257, 452, 669, 802, 849
TfiI GAWTC 4 cut(s) 44, 369, 488, 547
Tru1I TTAA 2 cut(s) 416, 525
Tru9I TTAA 2 cut(s) 416, 525
TscAI CASTG 4 cut(s) 322, 337, 917, 1102
TseFI GTSAC 1 cut(s) 941
TseI GCWGC 5 cut(s) 224, 698, 797, 902, 1112
Tsp45I GTSAC 1 cut(s) 941
TspDTI ATGAA 5 cut(s) 159, 315, 360, 858, 1023
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 4 cut(s) 322, 337, 917, 1102
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 3 cut(s) 25, 452, 802
XceI RCATGY 2 cut(s) 610, 1147
XhoI CTCGAG 1 cut(s) 1073
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 3 cut(s) 578, 993, 1023
Zsp2I ATGCAT 2 cut(s) 513, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.