Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8236391.1

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

69 .. 641

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8236391.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgccctgccggtcctcaagtcattacctaaatttgttaactaatttgcattattgctcatctgattttgcttttaattgttcgcagcttgccccgggagcttgtttggctgcaaatgataacataaggagtcaatgtcgtggagaacatagggtatggtactctaaagggtgtcctagcaaaattggcatctttgcagtcattttgttgggattgtacatcattgtgtatgcacctggaatgggaactattccttggattgtgaactcagagatttacccattgagatacagaggcactggtggagggattgctgcagtttccaactggactgcaaatctcatagtgagtgagacatacttgaccctcaccaaggaactgggttcggctggaactttcctcctatttgctgggttttctaccatcgggcttatattcatttacttcctggttcctgaaaccaaaggaatgcaattcgaagaggtcgagaaattgcttcagaagggtttccgacccaagttatttgctccaaaggacaccaaaggcaagcagaaggttgaggggtctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

190

Amino Acids

20.88

Weight (kDa)

9.03

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	2 cut(s)	161, 218
AfiI	CCNNNNNNNGG	2 cut(s)	242, 373
AjnI	CCWGG	2 cut(s)	235, 447
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	2 cut(s)	88, 101
AluI	AGCT	2 cut(s)	88, 101
Alw26I	GTCTC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	94
ApeKI	GCWGC	3 cut(s)	85, 110, 314
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	2 cut(s)	95, 96
AsuHPI	GGTGA	1 cut(s)	361
AsuII	TTCGAA	1 cut(s)	477
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	97, 97, 301
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	237, 449
BcnI	CCSGG	2 cut(s)	95, 96
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	3 cut(s)	86, 111, 315
BlsI	GCNGC	3 cut(s)	87, 112, 316
Bme1390I	CCNGG	4 cut(s)	95, 96, 237, 449
Bme18I	GGWCC	1 cut(s)	12
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	4 cut(s)	95, 96, 237, 449
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	477
BpuMI	CCSGG	2 cut(s)	95, 96
BsaJI	CCNNGG	4 cut(s)	93, 94, 254, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 373
Bse118I	RCCGGY	1 cut(s)	9
Bse1I	ACTGG	3 cut(s)	304, 332, 384
BseBI	CCWGG	2 cut(s)	237, 449
BseDI	CCNNGG	4 cut(s)	93, 94, 254, 372
BseLI	CCNNNNNNNGG	2 cut(s)	242, 373
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	3 cut(s)	304, 332, 384
BseXI	GCAGC	3 cut(s)	97, 97, 301
BseYI	CCCAGC	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	10, 95
BslI	CCNNNNNNNGG	2 cut(s)	242, 373
BsmAI	GTCTC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	474
BsoBI	CYCGRG	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	477
Bsp1407I	TGTACA	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	304, 332, 384
BssAI	RCCGGY	1 cut(s)	9
BssECI	CCNNGG	4 cut(s)	93, 94, 254, 372
BssT1I	CCWWGG	2 cut(s)	254, 372
Bst2UI	CCWGG	2 cut(s)	237, 449
Bst6I	CTCTTC	1 cut(s)	474
BstAUI	TGTACA	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	90, 548
BstDEI	CTNAG	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 107, 186
BstNI	CCWGG	2 cut(s)	237, 449
BstSCI	CCNGG	4 cut(s)	93, 94, 235, 447
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	97, 97, 301
BstXI	CCANNNNNNTGG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	90, 548
Cfr10I	RCCGGY	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	12
Cfr9I	CCCGGG	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	160, 217
CviJI	RGCY	5 cut(s)	88, 101, 110, 389, 430
CviKI_1	RGCY	5 cut(s)	88, 101, 110, 389, 430
CviQI	GTAC	2 cut(s)	160, 217
DdeI	CTNAG	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	254, 372
Eco47I	GGWCC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	235, 447
EcoT14I	CCWWGG	2 cut(s)	254, 372
ErhI	CCWWGG	2 cut(s)	254, 372
FaiI	YATR	7 cut(s)	125, 150, 157, 231, 344, 358, 434
Fnu4HI	GCNGC	3 cut(s)	86, 111, 315
Fsp4HI	GCNGC	3 cut(s)	86, 111, 315
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	3 cut(s)	86, 111, 315
GsaI	CCCAGC	1 cut(s)	414
HapII	CCGG	2 cut(s)	10, 95
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	130
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	2 cut(s)	10, 95
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	2 cut(s)	39, 265
Hpy188I	TCNGA	4 cut(s)	64, 271, 501, 512
Hpy188III	TCNNGA	2 cut(s)	455, 487
Hpy8I	GTNNAC	2 cut(s)	39, 265
HpyAV	CCTTC	2 cut(s)	496, 547
HpyCH4V	TGCA	7 cut(s)	49, 113, 197, 233, 317, 335, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 107, 186
HpyF3I	CTNAG	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	98, 532
Lsp1109I	GCAGC	3 cut(s)	97, 97, 301
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	177
MboII	GAAGA	1 cut(s)	491
MluCI	AATT	6 cut(s)	31, 43, 76, 183, 473, 491
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	2 cut(s)	348, 535
MnlI	CCTC	7 cut(s)	25, 287, 299, 377, 410, 475, 553
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	2 cut(s)	38, 75
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	10, 95
MspR9I	CCNGG	4 cut(s)	95, 96, 237, 449
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	237, 449
MwoI	GCNNNNNNNGC	3 cut(s)	98, 107, 186
NciI	CCSGG	2 cut(s)	95, 96
NlaIV	GGNNCC	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	87, 112, 316
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	235, 447
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	235, 447
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	161, 218
RsaNI	GTAC	2 cut(s)	160, 217
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	38, 75
SatI	GCNGC	3 cut(s)	86, 111, 315
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	4 cut(s)	95, 96, 237, 449
SetI	ASST	6 cut(s)	30, 90, 103, 238, 486, 558
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	477
SinI	GGWCC	1 cut(s)	12
SmaI	CCCGGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	6 cut(s)	31, 43, 76, 183, 473, 491
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	93, 94, 235, 447
StyI	CCWWGG	2 cut(s)	254, 372
TaqI	TCGA	2 cut(s)	477, 486
TasI	AATT	6 cut(s)	31, 43, 76, 183, 473, 491
TatI	WGTACW	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	38, 75
Tru9I	TTAA	2 cut(s)	38, 75
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	3 cut(s)	85, 110, 314
TspDTI	ATGAA	1 cut(s)	427
TspMI	CCCGGG	1 cut(s)	94
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	31
XmaI	CCCGGG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.