Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

12029504 .. 12029956

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0134400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAGACATCTCAACCCGTCGCTTGTTAATTCACAAATTGGAAGGAGAAATTAAATCATGGCCGGGTATGTCAAAGGTTCGTTCTCTTCTTGTCTTTGCAACTGACATGTCCTCAATTTCTTTCTTAAAAACACTGGTTTCTCGATATAAATTGTTGAGGACTCTAGATTTGGAGGATGTCCAAATTGATAAACTACCAGATGCCGTTGTTTACTTGTTCAACTTGAGATATTTAAATTTGAGGAACACTTTAATCAAGGACCTTCCGGAGTCCATAGGGCGTCTCCGCAACCTTCAATTTCTGAACATCAAGGATGCTAAGATAGCAACACTTGCACAAGGAATTGCAAAGTTGTTGAACCTGCGCTATCTTGTTATGTATTGCTACACTGGAAACCTTCTGGACTTCAAATATGTGAGTGGGATAAAAATGCCATCAAATGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001650 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000232 GO:2000234 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

150

Amino Acids

17.29

Weight (kDa)

9.6

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	26 - 129	3.6e-20	Leucine-rich repeat region
LRR_8	PF13855	53 - 105	1.6e-07	Leucine rich repeat
LRR_4	PF12799	75 - 112	6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	223, 299, 361, 412
Alw26I	GTCTC	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	238
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	2 cut(s)	193, 307
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	141, 397
BseAI	TCCGGA	1 cut(s)	268
BseGI	GGATG	2 cut(s)	184, 322
BseNI	ACTGG	2 cut(s)	141, 397
BshFI	GGCC	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	65, 269
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	268
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	141, 397
BssNI	GRCGYC	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	184, 322
BstHHI	GCGC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 335
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	184, 322
BtsIMutI	CAGTG	2 cut(s)	134, 390
BveI	ACCTGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	60, 109
CviJI	RGCY	1 cut(s)	64
CviKI_1	RGCY	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	321
DraI	TTTAAA	1 cut(s)	237
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	2 cut(s)	63, 112
FaiI	YATR	7 cut(s)	61, 71, 110, 150, 278, 380, 417
FatI	CATG	2 cut(s)	59, 108
FokI	GGATG	2 cut(s)	191, 329
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	65, 269
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	63, 112
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	163, 272
HpaII	CCGG	2 cut(s)	65, 269
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	4 cut(s)	144, 167, 269, 404
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	4 cut(s)	38, 275, 305, 410
HpyCH4V	TGCA	3 cut(s)	101, 338, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 335
HpyF3I	CTNAG	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	63, 112
HspAI	GCGC	1 cut(s)	367
Kpn2I	TCCGGA	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	78, 122, 213, 282, 377, 378, 389
LweI	GCATC	2 cut(s)	193, 307
MaeI	CTAG	1 cut(s)	167
MboII	GAAGA	2 cut(s)	17, 80
MluCI	AATT	9 cut(s)	30, 38, 51, 117, 152, 186, 238, 299, 345
MlyI	GAGTC	2 cut(s)	157, 281
MnlI	CCTC	4 cut(s)	124, 153, 169, 237
MroI	TCCGGA	1 cut(s)	268
MseI	TTAA	5 cut(s)	29, 54, 128, 236, 254
MspI	CCGG	2 cut(s)	65, 269
MspR9I	CCNGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	326, 335
NciI	CCSGG	1 cut(s)	66
NlaIII	CATG	2 cut(s)	63, 112
NspI	RCATGY	1 cut(s)	112
PciI	ACATGT	1 cut(s)	108
PleI	GAGTC	2 cut(s)	157, 280
PpsI	GAGTC	2 cut(s)	157, 280
PpuMI	RGGWCCY	1 cut(s)	262
PscI	ACATGT	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
SaqAI	TTAA	5 cut(s)	29, 54, 128, 236, 254
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	2 cut(s)	157, 281
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	5 cut(s)	81, 267, 297, 366, 402
SfaNI	GCATC	2 cut(s)	193, 307
SinI	GGWCC	1 cut(s)	262
SmiI	ATTTAAAT	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	9 cut(s)	30, 38, 51, 117, 152, 186, 238, 299, 345
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	64
SwaI	ATTTAAAT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	145
TasI	AATT	9 cut(s)	30, 38, 51, 117, 152, 186, 238, 299, 345
Tru1I	TTAA	5 cut(s)	29, 54, 128, 236, 254
Tru9I	TTAA	5 cut(s)	29, 54, 128, 236, 254
TscAI	CASTG	2 cut(s)	141, 397
TspRI	CASTG	2 cut(s)	141, 397
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	238
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	112
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.