Rh3BG297300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
29835780 .. 29836190
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG297300.1

Sequence Viewer

Length: 309 bp
ATGCCGTCATATCTTCCAAGTCCTTGGGATTATTTTGCTACATATAAAGGCATGGATAAAGTTGATGATAACTGGGGAAAACAATTGGTGATGGCCGATCAAATTGATACTGTCAATGGCAATGGTAGCAGTGATCCGATGGAGACCACAACAGCTGAATATGAAAGCAATAAGGAAGCACTTCTTCTTGAGGACACTGGAGAAGTTGAAAGATATGGTGGATGTGTTTTCTCAAGTAACGTAGCTTGCGGCAAACTGGCCACCGACAATGCAAATAGTCAGGCTCATAACTCAGGATCACATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.1

Weight (kDa)

4.26

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 249
AclWI GGATC 2 cut(s) 128, 304
AcoI YGGCCR 2 cut(s) 93, 258
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 2 cut(s) 155, 245
AluI AGCT 2 cut(s) 155, 245
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 128, 304
AoxI GGCC 2 cut(s) 93, 258
Asp700I GAANNNNTTC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 100
BalI TGGCCA 1 cut(s) 260
BccI CCATC 2 cut(s) 85, 133
BcoDI GTCTC 1 cut(s) 137
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 82
BmuI ACTGGG 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 209, 217
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 23
Bse1I ACTGG 3 cut(s) 77, 202, 261
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 3 cut(s) 77, 202, 261
BshFI GGCC 2 cut(s) 95, 260
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 95, 260
Bso31I GGTCTC 1 cut(s) 137
Bsp143I GATC 3 cut(s) 97, 133, 296
BspACI CCGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 95, 260
BspCNI CTCAG 1 cut(s) 305
BspPI GGATC 2 cut(s) 128, 304
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 3 cut(s) 77, 202, 261
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 97, 133, 296
BssT1I CCWWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 3 cut(s) 100, 136, 299
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 97, 133, 296
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 24
BsuRI GGCC 2 cut(s) 95, 260
BtsCI GGATG 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 195
Cac8I GCNNGC 1 cut(s) 247
CviAII CATG 2 cut(s) 52, 302
CviJI RGCY 5 cut(s) 95, 155, 245, 260, 284
CviKI_1 RGCY 5 cut(s) 95, 155, 245, 260, 284
DdeI CTNAG 1 cut(s) 292
DpnI GATC 3 cut(s) 99, 135, 298
DpnII GATC 3 cut(s) 97, 133, 296
EaeI YGGCCR 2 cut(s) 93, 258
Eco130I CCWWGG 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 55, 305
FaiI YATR 8 cut(s) 10, 43, 45, 53, 162, 216, 288, 303
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 2 cut(s) 51, 301
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 95, 260
Hin1II CATG 2 cut(s) 55, 305
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 2 cut(s) 188, 294
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 55, 305
Kzo9I GATC 3 cut(s) 97, 133, 296
LpnPI CCDG 5 cut(s) 58, 183, 242, 266, 279
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 99, 135, 298
MboI GATC 3 cut(s) 97, 133, 296
MboII GAAGA 2 cut(s) 5, 176
MfeI CAATTG 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 83, 102
MluNI TGGCCA 1 cut(s) 260
MnlI CCTC 1 cut(s) 184
Mox20I TGGCCA 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 155
MunI CAATTG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 3 cut(s) 97, 133, 296
NlaIII CATG 2 cut(s) 55, 305
PdmI GAANNNNTTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 155
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 3 cut(s) 97, 133, 296
SetI ASST 3 cut(s) 157, 243, 247
SmlI CTYRAG 2 cut(s) 188, 232
SmoI CTYRAG 2 cut(s) 188, 232
Sse9I AATT 2 cut(s) 83, 102
SsiI CCGC 1 cut(s) 249
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 243
TasI AATT 2 cut(s) 83, 102
TauI GCSGC 1 cut(s) 252
TscAI CASTG 2 cut(s) 136, 202
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 2 cut(s) 136, 202
XmnI GAANNNNTTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.