Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

59982827 .. 59983195

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCGGGAGCTTGCGACGTGGCTTCGAATGAGGGCTTGAAAAAGTCATGTGGCGGAGAACATCATGTATGGTACACAAAGGGGTGTCCAAGCAAAGTTGGACTCTTTGCAGTAATCCTTTTAGGATTGTACATCATTATCTACGCACCTGGGATGGGAACGGTACCGTGGATTGTGAAATCAGAGATACACCCTTTGAGATACAGAGGCACATGTGGAGGGATTGTTGCAGTGGCTAATTGGAGTGCCAGTGTGATAGTGAGTGAGACATTCTTAACCCTCACTCATGCTTGGGGTTCTGCTGGCACGTTCCTCCTCTTTGCTGGATTTTCTCTCATTGGACTCATTTATTTTCTTCTTGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

123

Amino Acids

12.95

Weight (kDa)

8.4

Isoelectric Point (pI)

27.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	31 - 119	3.3e-17	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	163
AciI	CCGC	1 cut(s)	54
AfaI	GTAC	3 cut(s)	74, 131, 165
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	40
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	6
AsuII	TTCGAA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	163
BccI	CCATC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	260
Bme1390I	CCNGG	2 cut(s)	6, 150
BmgBI	CACGTC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	165, 364
BmrFI	CCNGG	2 cut(s)	6, 150
Bpu14I	TTCGAA	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	149, 167
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 235, 240, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	149, 167
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	129
BspACI	CCGC	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	165, 364
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	149, 167
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	163, 168
BstAUI	TGTACA	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	13, 304
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	4, 148
BtgI	CCRYGG	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 256
Cac8I	GCNNGC	2 cut(s)	13, 304
Csp6I	GTAC	3 cut(s)	73, 130, 164
CviAII	CATG	4 cut(s)	48, 65, 213, 287
CviJI	RGCY	4 cut(s)	11, 23, 36, 236
CviKI_1	RGCY	4 cut(s)	11, 23, 36, 236
CviQI	GTAC	3 cut(s)	73, 130, 164
EciI	GGCGGA	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	51, 68, 216, 290
FaiI	YATR	5 cut(s)	49, 66, 70, 214, 288
FatI	CATG	4 cut(s)	47, 64, 212, 286
FokI	GGATG	1 cut(s)	166
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	4 cut(s)	51, 68, 216, 290
HinfI	GANTC	2 cut(s)	102, 342
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	1 cut(s)	75
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	163, 168
HpyCH4IV	ACGT	2 cut(s)	18, 308
HpyCH4V	TGCA	2 cut(s)	110, 230
HpySE526I	ACGT	2 cut(s)	18, 308
Hsp92II	CATG	4 cut(s)	51, 68, 216, 290
KpnI	GGTACC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	6 cut(s)	18, 135, 162, 262, 288, 309
MaeII	ACGT	2 cut(s)	18, 308
MboII	GAAGA	1 cut(s)	347
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	2 cut(s)	96, 336
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	25, 200, 212, 290, 323, 326
MseI	TTAA	1 cut(s)	275
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	6, 150
MvaI	CCWGG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	6
NlaIII	CATG	4 cut(s)	51, 68, 216, 290
NlaIV	GGNNCC	2 cut(s)	165, 364
NspI	RCATGY	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	26
PciI	ACATGT	1 cut(s)	212
PleI	GAGTC	2 cut(s)	96, 336
PpsI	GAGTC	2 cut(s)	96, 336
PscI	ACATGT	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	165, 364
RsaI	GTAC	3 cut(s)	74, 131, 165
RsaNI	GTAC	3 cut(s)	73, 130, 164
SaqAI	TTAA	1 cut(s)	275
SchI	GAGTC	2 cut(s)	96, 336
ScrFI	CCNGG	2 cut(s)	6, 150
SetI	ASST	4 cut(s)	13, 21, 151, 311
SfuI	TTCGAA	1 cut(s)	26
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	4, 148
TaaI	ACNGT	2 cut(s)	163, 168
TaiI	ACGT	2 cut(s)	21, 311
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	238
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	2 cut(s)	237, 256
TspRI	CASTG	2 cut(s)	237, 256
XceI	RCATGY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.