Rmu_ssc0000213.1_g000084

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
OG0000977
Physical Location & Seq
Forward (+)
330002 .. 333000
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000213.1_g000084.1.cds

Sequence Viewer

Length: 648 bp
atggcagcaatggcccccaaactcagagggatggtacccaaagggatggtacccaaaacagataatctcctcctaaagattgagatccttgcaattcttcttctggaagttgaaaagggtttaaaagcagagaaaaagaaagccaaaattgaggatgagccacaaatagggaagtttgaagttcaccaaggagatcataacaattgggaaaaggaattggtggctaaatataggtttatggatcatatatcagagtccacaagtaccaaaattgaggatgagtcgccaaaacaaaagttgaaagttcatcaccaagatgaaaataatagttgggaaaaggaattggtggcaaaatatgggtgtatggaacatatgtcagaattcaaatgtaccaaacctaaggacactgccaagtatgaaaatgaagaagaaccatcaaaagatgaaagatacaattgggaagaggaattggatgggtttatggaggagcatgtatcgggattcacgtgcaccaaacctaaggagactaagaaatctgaaattgaagaagaggcaccaatagaagagaattacagatggccaagggaagaggccggatttggaagttgtagaagcactgaaagaagaaaacaacaaatcattggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

25.1

Weight (kDa)

5.46

Isoelectric Point (pI)

66.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 34, 49
AccB1I GGYRCC 3 cut(s) 34, 49, 553
AclWI GGATC 2 cut(s) 79, 249
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 1 cut(s) 380
AcvI CACGTG 1 cut(s) 507
AfaI GTAC 4 cut(s) 36, 51, 265, 391
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 5 cut(s) 113, 179, 301, 385, 545
Alw21I GWGCWC 1 cut(s) 512
Alw26I GTCTC 1 cut(s) 518
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 2 cut(s) 79, 249
AoxI GGCC 3 cut(s) 12, 578, 591
ApaLI GTGCAC 1 cut(s) 508
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 380
Asp718I GGTACC 2 cut(s) 34, 49
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 176, 302
AxyI CCTNAGG 2 cut(s) 399, 519
BaeGI GKGCMC 1 cut(s) 512
BalI TGGCCA 1 cut(s) 580
BanI GGYRCC 3 cut(s) 34, 49, 553
BbrPI CACGTG 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 17
BccI CCATC 5 cut(s) 25, 40, 442, 467, 570
BcoDI GTCTC 1 cut(s) 518
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 4 cut(s) 15, 36, 51, 555
BsaAI YACGTR 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 187, 581
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse21I CCTNAGG 2 cut(s) 399, 519
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 187, 581
BseGI GGATG 5 cut(s) 36, 51, 160, 283, 478
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 37
BseRI GAGGAG 2 cut(s) 59, 500
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 3 cut(s) 14, 580, 593
BshNI GGYRCC 3 cut(s) 34, 49, 553
BsiHKAI GWGCWC 1 cut(s) 512
BsiSI CCGG 1 cut(s) 594
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 3 cut(s) 14, 580, 593
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 3 cut(s) 84, 193, 241
BspANI GGCC 3 cut(s) 14, 580, 593
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 15, 36, 51, 555
BspPI GGATC 2 cut(s) 79, 249
BspT107I GGYRCC 3 cut(s) 34, 49, 553
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 187, 581
BssMI GATC 3 cut(s) 84, 193, 241
BssT1I CCWWGG 2 cut(s) 187, 581
Bst6I CTCTTC 4 cut(s) 456, 543, 558, 582
BstBAI YACGTR 1 cut(s) 507
BstDEI CTNAG 4 cut(s) 23, 399, 519, 528
BstF5I GGATG 5 cut(s) 36, 51, 160, 283, 478
BstKTI GATC 3 cut(s) 87, 196, 244
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 3 cut(s) 84, 193, 241
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 494
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 84
Bsu36I CCTNAGG 2 cut(s) 399, 519
BsuRI GGCC 3 cut(s) 14, 580, 593
BtsCI GGATG 5 cut(s) 36, 51, 160, 283, 478
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 2 cut(s) 405, 615
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 4 cut(s) 35, 50, 264, 390
CviAII CATG 1 cut(s) 491
CviJI RGCY 6 cut(s) 14, 143, 160, 224, 580, 593
CviKI_1 RGCY 6 cut(s) 14, 143, 160, 224, 580, 593
CviQI GTAC 4 cut(s) 35, 50, 264, 390
DdeI CTNAG 4 cut(s) 23, 399, 519, 528
DpnI GATC 3 cut(s) 86, 195, 243
DpnII GATC 3 cut(s) 84, 193, 241
DraI TTTAAA 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 4 cut(s) 456, 543, 558, 582
EarI CTCTTC 4 cut(s) 456, 543, 558, 582
Eco130I CCWWGG 2 cut(s) 187, 581
Eco72I CACGTG 1 cut(s) 507
Eco81I CCTNAGG 2 cut(s) 399, 519
EcoRI GAATTC 1 cut(s) 380
EcoT14I CCWWGG 2 cut(s) 187, 581
ErhI CCWWGG 2 cut(s) 187, 581
FaeI CATG 1 cut(s) 494
FatI CATG 1 cut(s) 490
FauNDI CATATG 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 5 cut(s) 43, 58, 167, 290, 485
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 3 cut(s) 14, 580, 593
HapII CCGG 1 cut(s) 594
Hin1II CATG 1 cut(s) 494
HinfI GANTC 3 cut(s) 254, 281, 501
HpaII CCGG 1 cut(s) 594
HphI GGTGA 2 cut(s) 176, 302
Hpy166II GTNNAC 3 cut(s) 184, 258, 510
Hpy188I TCNGA 4 cut(s) 26, 253, 379, 538
Hpy188III TCNNGA 2 cut(s) 104, 498
Hpy8I GTNNAC 3 cut(s) 184, 258, 510
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 2 cut(s) 92, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 23, 399, 519, 528
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 1 cut(s) 494
KpnI GGTACC 2 cut(s) 38, 53
Kzo9I GATC 3 cut(s) 84, 193, 241
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 2 cut(s) 89, 607
Lsp1109I GCAGC 1 cut(s) 17
MaeII ACGT 1 cut(s) 506
MalI GATC 3 cut(s) 86, 195, 243
MboI GATC 3 cut(s) 84, 193, 241
MfeI CAATTG 2 cut(s) 202, 454
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 512
MlsI TGGCCA 1 cut(s) 580
MluNI TGGCCA 1 cut(s) 580
MlyI GAGTC 2 cut(s) 263, 290
MnlI CCTC 8 cut(s) 20, 80, 145, 268, 457, 478, 544, 583
Mox20I TGGCCA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 580
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 580
MspI CCGG 1 cut(s) 594
MunI CAATTG 2 cut(s) 202, 454
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 372
NdeII GATC 3 cut(s) 84, 193, 241
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 4 cut(s) 15, 36, 51, 555
NspI RCATGY 1 cut(s) 494
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PfeI GAWTC 1 cut(s) 501
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 262, 289
PmaCI CACGTG 1 cut(s) 507
PmlI CACGTG 1 cut(s) 507
PpsI GAGTC 2 cut(s) 262, 289
Ppu21I YACGTR 1 cut(s) 507
PspCI CACGTG 1 cut(s) 507
PspN4I GGNNCC 4 cut(s) 15, 36, 51, 555
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 4 cut(s) 36, 51, 265, 391
RsaNI GTAC 4 cut(s) 35, 50, 264, 390
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 84, 193, 241
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 2 cut(s) 263, 290
SduI GDGCHC 1 cut(s) 512
SetI ASST 4 cut(s) 236, 400, 509, 520
SmiMI CAYNNNNRTG 1 cut(s) 315
StyI CCWWGG 2 cut(s) 187, 581
TaiI ACGT 1 cut(s) 509
TfiI GAWTC 1 cut(s) 501
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 2 cut(s) 412, 622
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 296, 333, 432, 438, 459
TspRI CASTG 2 cut(s) 412, 622
VneI GTGCAC 1 cut(s) 508
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.