Rh1CG342500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000977
Physical Location & Seq
Reverse (-)
61697834 .. 61698965
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG342500.1

Sequence Viewer

Length: 264 bp
ATGAGAGGACTGGGCAGCGATGAAGTTGGTTGTTCTGACGGAAAGCGACGGAGAGCGGCGACGATTCTGGGTGCGCGATCTGGTTTGACGCGTAACAAGTCCTATACACCAGCATTTATCAATAAGGGCCTCATATCTAAAGCTTACACTCCTAAACTCAGAGAAGCTGTTAAGCGTTTGCAAGCAGAGAAAAAGGAAGCCAAAATTGAGGATGAGCCACAAAAGGAGAAGTTTGAAGTTCACCAAGGAGAAAATGACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.72

Weight (kDa)

9.52

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AccII CGCG 2 cut(s) 76, 91
AciI CCGC 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 2 cut(s) 143, 167
AluI AGCT 2 cut(s) 143, 167
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 233
BbvI GCAGC 1 cut(s) 27
BisI GCNGC 2 cut(s) 16, 57
BlsI GCNGC 2 cut(s) 17, 58
BmgT120I GGNCC 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 2 cut(s) 76, 91
BshFI GGCC 1 cut(s) 129
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 2 cut(s) 76, 91
BsrBI CCGCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 2 cut(s) 76, 91
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstUI CGCG 2 cut(s) 76, 91
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 97
CviJI RGCY 5 cut(s) 129, 143, 167, 200, 217
CviKI_1 RGCY 5 cut(s) 129, 143, 167, 200, 217
DdeI CTNAG 1 cut(s) 158
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaiI YATR 2 cut(s) 105, 134
Fnu4HI GCNGC 2 cut(s) 16, 57
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 16, 57
GlaI GCGC 1 cut(s) 75
GluI GCNGC 2 cut(s) 16, 57
HaeIII GGCC 1 cut(s) 129
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 37, 161
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 2 cut(s) 51, 64
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 158
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 3 cut(s) 53, 66, 123
Lsp1109I GCAGC 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 79
MbiI CCGCTC 1 cut(s) 56
MboI GATC 1 cut(s) 77
MluCI AATT 1 cut(s) 204
MluI ACGCGT 1 cut(s) 89
MnlI CCTC 2 cut(s) 140, 202
MseI TTAA 1 cut(s) 171
MvnI CGCG 2 cut(s) 76, 91
NdeII GATC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 17, 58
PspPI GGNCC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 16, 57
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 127
SetI ASST 2 cut(s) 145, 169
SgeI CNNG 9 cut(s) 23, 80, 87, 93, 102, 109, 122, 194, 257
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 56
StyI CCWWGG 1 cut(s) 244
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 2 cut(s) 54, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.