Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

84061897 .. 84062971

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGCAAAAAGGACTAATGGCTGGTTTCGGTGGGAAACTCTACGACTTGGGACTGCATGAAGTGTTTGAAGTCTTCATCTCCGGACTGTGGGTTCGTGCTTCAAAGGCGATAAGCTACTTCCGGGAGCTTGTTTATTTGATCTCAAATGATACAACAAAGGACAATTGCCATGGAGAAGACGGGCGTGGTACACAAGGGAATGTCCAAGCAACCTTGATCTTTGTCCTCATTTTCATCCCGAAACGAGAGAGGCTTCCAATTGAAGAGGTTGAGAAGATGCTAGAGCCGAGGGCTCTGCACTTCAAGTTACGGGAAAAAAGGCCCAAGACTCTAGAAAAGAGTCGAGCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

118

Amino Acids

13.52

Weight (kDa)

9.33

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	83
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgsI	TTSAA	4 cut(s)	71, 105, 266, 307
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	117, 130, 350
AluI	AGCT	3 cut(s)	117, 130, 350
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	2 cut(s)	67, 186
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BcnI	CCSGG	1 cut(s)	125
BfaI	CTAG	2 cut(s)	284, 335
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	2 cut(s)	67, 186
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	172, 290
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	172, 290
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	84, 124
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	141, 219
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	172, 290
BssMI	GATC	2 cut(s)	141, 219
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	144, 222
BstMBI	GATC	2 cut(s)	141, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	123
BstV2I	GAAGAC	2 cut(s)	67, 186
BsuRI	GGCC	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	2 cut(s)	59, 173
CviJI	RGCY	8 cut(s)	23, 117, 130, 256, 289, 296, 325, 350
CviKI_1	RGCY	8 cut(s)	23, 117, 130, 256, 289, 296, 325, 350
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	2 cut(s)	143, 221
DpnII	GATC	2 cut(s)	141, 219
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	62, 176
FaiI	YATR	2 cut(s)	60, 174
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	58, 172
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	298
FspBI	CTAG	2 cut(s)	284, 335
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	2 cut(s)	84, 124
Hin1II	CATG	2 cut(s)	62, 176
HinfI	GANTC	2 cut(s)	331, 343
HpaII	CCGG	2 cut(s)	84, 124
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	84, 241, 335
Hpy8I	GTNNAC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	7, 58, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	62, 176
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	141, 219
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	3 cut(s)	9, 97, 137
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	284, 335
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	2 cut(s)	143, 221
MboI	GATC	2 cut(s)	141, 219
MboII	GAAGA	4 cut(s)	67, 191, 278, 289
MfeI	CAATTG	2 cut(s)	166, 261
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	166, 261
MlyI	GAGTC	2 cut(s)	325, 352
MnlI	CCTC	4 cut(s)	239, 246, 262, 285
MroI	TCCGGA	1 cut(s)	83
MspI	CCGG	2 cut(s)	84, 124
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	2 cut(s)	166, 261
MwoI	GCNNNNNNNGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	2 cut(s)	141, 219
NlaIII	CATG	2 cut(s)	62, 176
NmeAIII	GCCGAG	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	123
PleI	GAGTC	2 cut(s)	325, 351
PpsI	GAGTC	2 cut(s)	325, 351
PspPI	GGNCC	1 cut(s)	324
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	141, 219
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	2 cut(s)	325, 352
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	5 cut(s)	119, 132, 218, 273, 352
SfaNI	GCATC	1 cut(s)	270
Sse9I	AATT	2 cut(s)	166, 261
SspMI	CTAG	2 cut(s)	284, 335
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	346
TasI	AATT	2 cut(s)	166, 261
TspDTI	ATGAA	3 cut(s)	67, 75, 226
XbaI	TCTAGA	1 cut(s)	334
XspI	CTAG	2 cut(s)	284, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.