Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

43409674 .. 43410485

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG261100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCGCAGCTCATTCTCCAACTATTAGCCACTTGGAATCCGATCACTTTGGTACCAACACTACATCTCCAACTTATATATGTTTCTGCTTCTAATCCTGCAGCATGGAACTGCATGACATGCTTGAAATCAACAGATTGCGCCTTATGTGCTAGTAATGTTGATAATCTGGCCCCAGGAGTCAATGCCATGAAGAACATAGGGTACTCTAAAGGGTGTCCTACAAAAATTGGTATCTTTGCAGTCATTTTGTTGGGATTGTACACCATTGCACCTGGAATGGGAACTATTCCTTGGATTGTGAACTCAGAGATATACCCATTGAGATACAGAGGCACTGGTGGAGGGATTGCTGCAGTTTCCAACTGCACTGCAAATCTCATTGTGAGTGAGACATACTTAACCCTCACTAAGGAACTGGGTTCGGCTGGAACCTTCCTCCTATTTGCTGGGTTTTCTACCATTGGACTTGTATTCATTTACTTATTGGTTCCTAAAACCAAAGGAATGCAATTCGAAGAGGTCGAGAAATTGCTCCAGAAGGGTTTCCGATCCAAGTTATTTGCTCCGAAGGACACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

194

Amino Acids

20.9

Weight (kDa)

8.9

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	76 - 178	3.8e-22	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	52
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	546
AfaI	GTAC	3 cut(s)	54, 206, 263
AfiI	CCNNNNNNNGG	2 cut(s)	281, 412
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	175, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	3 cut(s)	7, 101, 353
Asp700I	GAANNNNTTC	1 cut(s)	545
Asp718I	GGTACC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	516
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BanI	GGYRCC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	19, 113, 340
BciT130I	CCWGG	2 cut(s)	177, 276
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	2 cut(s)	99, 354
BisI	GCNGC	4 cut(s)	5, 8, 102, 354
BlsI	GCNGC	4 cut(s)	6, 9, 103, 355
Bme1390I	CCNGG	2 cut(s)	177, 276
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	4 cut(s)	54, 174, 433, 492
BmrFI	CCNGG	2 cut(s)	177, 276
BmrI	ACTGGG	1 cut(s)	428
BmuI	ACTGGG	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	516
BsaJI	CCNNGG	2 cut(s)	175, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 412
Bse1I	ACTGG	2 cut(s)	343, 423
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	177, 276
BseDI	CCNNGG	2 cut(s)	175, 293
BseLI	CCNNNNNNNGG	2 cut(s)	281, 412
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	343, 423
BseXI	GCAGC	3 cut(s)	19, 113, 340
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	281, 412
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	516
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	42, 551
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	320
BspLI	GGNNCC	4 cut(s)	54, 174, 433, 492
BspMAI	CTGCAG	2 cut(s)	103, 358
BspPI	GGATC	1 cut(s)	546
BspT104I	TTCGAA	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	343, 423
BssECI	CCNNGG	2 cut(s)	175, 293
BssMI	GATC	2 cut(s)	42, 551
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	177, 276
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstAUI	TGTACA	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	307, 411
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	45, 554
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	42, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 149
BstNI	CCWGG	2 cut(s)	177, 276
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	175, 274
BstSFI	CTRYAG	2 cut(s)	99, 354
BstV1I	GCAGC	3 cut(s)	19, 113, 340
BsuRI	GGCC	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	336, 369
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	53, 205, 262
CviAII	CATG	4 cut(s)	105, 115, 120, 190
CviJI	RGCY	4 cut(s)	10, 29, 173, 428
CviKI_1	RGCY	4 cut(s)	10, 29, 173, 428
CviQI	GTAC	3 cut(s)	53, 205, 262
DdeI	CTNAG	2 cut(s)	307, 411
DpnI	GATC	2 cut(s)	44, 553
DpnII	GATC	2 cut(s)	42, 551
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	175, 274
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	4 cut(s)	108, 118, 123, 193
FatI	CATG	4 cut(s)	104, 114, 119, 189
Fnu4HI	GCNGC	4 cut(s)	5, 8, 102, 354
Fsp4HI	GCNGC	4 cut(s)	5, 8, 102, 354
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	4 cut(s)	5, 8, 102, 354
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	108, 118, 123, 193
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	37, 180
Hpy166II	GTNNAC	2 cut(s)	264, 304
Hpy188I	TCNGA	4 cut(s)	42, 310, 551, 570
Hpy188III	TCNNGA	2 cut(s)	526, 538
Hpy8I	GTNNAC	2 cut(s)	264, 304
HpyAV	CCTTC	3 cut(s)	445, 535, 565
HpyCH4V	TGCA	8 cut(s)	101, 114, 242, 272, 356, 369, 374, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 149
HpyF3I	CTNAG	2 cut(s)	307, 411
Hsp92II	CATG	4 cut(s)	108, 118, 123, 193
HspAI	GCGC	1 cut(s)	141
KpnI	GGTACC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	42, 551
LmnI	GCTCC	2 cut(s)	540, 571
Lsp1109I	GCAGC	3 cut(s)	19, 113, 340
MaeI	CTAG	1 cut(s)	153
MalI	GATC	2 cut(s)	44, 553
MboI	GATC	2 cut(s)	42, 551
MboII	GAAGA	2 cut(s)	205, 530
MluCI	AATT	4 cut(s)	228, 512, 530, 580
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	3 cut(s)	43, 94, 387
MnlI	CCTC	5 cut(s)	326, 338, 416, 449, 514
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	2 cut(s)	401, 583
MspR9I	CCNGG	2 cut(s)	177, 276
Mva1269I	GAATGC	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	177, 276
MwoI	GCNNNNNNNGC	2 cut(s)	120, 149
NdeII	GATC	2 cut(s)	42, 551
NlaIII	CATG	4 cut(s)	108, 118, 123, 193
NlaIV	GGNNCC	4 cut(s)	54, 174, 433, 492
NspI	RCATGY	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	4 cut(s)	6, 9, 103, 355
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	175, 274
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	175, 274
PspN4I	GGNNCC	4 cut(s)	54, 174, 433, 492
PspPI	GGNCC	1 cut(s)	172
PsrI	GAACNNNNNNTAC	2 cut(s)	188, 220
PstI	CTGCAG	2 cut(s)	103, 358
RsaI	GTAC	3 cut(s)	54, 206, 263
RsaNI	GTAC	3 cut(s)	53, 205, 262
SaqAI	TTAA	2 cut(s)	401, 583
SatI	GCNGC	4 cut(s)	5, 8, 102, 354
Sau3AI	GATC	2 cut(s)	42, 551
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	177, 276
SetI	ASST	4 cut(s)	12, 277, 437, 525
SfcI	CTRYAG	2 cut(s)	99, 354
SfuI	TTCGAA	1 cut(s)	516
Sse9I	AATT	4 cut(s)	228, 512, 530, 580
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	175, 274
StyI	CCWWGG	1 cut(s)	293
TaqI	TCGA	2 cut(s)	516, 525
TasI	AATT	4 cut(s)	228, 512, 530, 580
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	401, 583
Tru9I	TTAA	2 cut(s)	401, 583
TscAI	CASTG	2 cut(s)	343, 376
TseI	GCWGC	3 cut(s)	7, 101, 353
TspDTI	ATGAA	2 cut(s)	206, 466
TspRI	CASTG	2 cut(s)	343, 376
XagI	CCTNNNNNAGG	1 cut(s)	410
XceI	RCATGY	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.