Rh5CG296200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000977
Physical Location & Seq
Reverse (-)
32614822 .. 32615142
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG296200.1

Sequence Viewer

Length: 321 bp
ATGTGTGTTCCGTTGAGGTCAGAGGAGAAGGTCCGAGCAGAGATTACAATAGAAGATGAAGAAGAAGTAACAGCGAGAACCATTTCTGAAATTGAAGCAATCAGATTCGGGTATAAGAGTGCTCGACGTCAGAGATTGGCGCTCCAGTTCGGTCGAGGACGGCGGGCGACGCTAGAGAGAGGAATCTCAGTAGCGACTACTTCAATTTCTCAAGAAAATTTTGAAAAATTACTGAGAGGAAAGAGTAGTAAAATCGTAGAAGGCGAAGTAGCGAAGACCGAGGTCGACTCAAAGTTGCGGAGGCTAACGAAGATCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.11

Weight (kDa)

9.9

Isoelectric Point (pI)

62.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 285
AciI CCGC 2 cut(s) 163, 298
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 127
AgsI TTSAA 3 cut(s) 95, 204, 224
Alw21I GWGCWC 1 cut(s) 124
AlwI GGATC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 176
BfaI CTAG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 281
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 201, 224
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 312
BspACI CCGC 2 cut(s) 163, 298
BspCNI CTCAG 2 cut(s) 200, 225
BspPI GGATC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 187, 233
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstPAI GACNNNNGTC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 31
CseI GACGC 1 cut(s) 178
CviJI RGCY 1 cut(s) 304
CviKI_1 RGCY 1 cut(s) 304
DdeI CTNAG 2 cut(s) 187, 233
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 31
FaiI YATR 1 cut(s) 114
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 1 cut(s) 285
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 143
HapII CCGG 1 cut(s) 316
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 3 cut(s) 105, 183, 287
HpaII CCGG 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 5 cut(s) 22, 35, 88, 104, 132
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 129, 172
HpyAV CCTTC 2 cut(s) 22, 254
HpyCH4IV ACGT 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 187, 233
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 127
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 312
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 1 cut(s) 158
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 4 cut(s) 65, 71, 74, 286
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 4 cut(s) 90, 204, 217, 227
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 7 cut(s) 9, 16, 149, 173, 230, 274, 294
MroXI GAANNNNTTC 1 cut(s) 82
MspI CCGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 105, 183
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 281
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 312
SalI GTCGAC 1 cut(s) 284
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 124
SetI ASST 4 cut(s) 20, 33, 130, 285
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 4 cut(s) 90, 204, 217, 227
SsiI CCGC 2 cut(s) 163, 298
SspMI CTAG 1 cut(s) 173
TaiI ACGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 124, 154, 285
TaqII GACCGA 2 cut(s) 140, 293
TasI AATT 4 cut(s) 90, 204, 217, 227
TfiI GAWTC 2 cut(s) 105, 183
TspDTI ATGAA 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 1 cut(s) 173
ZraI GACGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.