Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

68638847 .. 68639308

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0503400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATGCAAGCTCTCAAACGGGACAACCCAAAAAGCAGAAGTTGTCGGGGGAAAAAGAGGAAGGAGGCAGCATGAGCTTAAGCAAGTTACCTGATGTGCTTATTGAACAAATTATCTCCTTCCTTCCAACAAAAGATGCGATCCGAACAAGCATTCTGTCTAAAAGATGGGAATACCTATGGACATCACTTCCCGAACTTAGGTTCATTCAAGGGATGAATGAAACGAGATGTTCCTTTGTGACTGCTGTGGACAGAGCGCTAATTCTTCGTGGCCCTGCTGATCTAAAACAGTTTCTTCTTTCGTTTAGAGGGTTAGAGCAGCTAGATGATGCATCTCGTGTTAATCGGTGGATCACTGCCATTCTAAGACGTAATGTTGAAGAGCTTATACTTCGCCTGTCTAACTCTAAGGAGCTTTCACTGCCTCGTTCTTTATTTATTTCTGCAACACTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.37

Weight (kDa)

9.46

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	27 - 66	3e-10	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	136, 362
AfeI	AGCGCT	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	107, 212, 383
AluBI	AGCT	5 cut(s)	12, 78, 325, 388, 418
AluI	AGCT	5 cut(s)	12, 78, 325, 388, 418
AlwI	GGATC	2 cut(s)	136, 362
Aor51HI	AGCGCT	1 cut(s)	261
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	69, 322
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	375, 407
BauI	CACGAG	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	81, 334
BccI	CCATC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	263
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	2 cut(s)	70, 323
BlsI	GCNGC	2 cut(s)	71, 324
BmgT120I	GGNCC	1 cut(s)	275
BmsI	GCATC	3 cut(s)	127, 322, 344
BsaAI	YACGTR	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	10, 222
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	81, 334
BshFI	GGCC	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	141, 283, 354
BspANI	GGCC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	136, 362
BspQI	GCTCTTC	1 cut(s)	378
BspTI	CTTAAG	1 cut(s)	79
BssMI	GATC	3 cut(s)	141, 283, 354
BssSI	CACGAG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	3 cut(s)	200, 368, 411
BstF5I	GGATG	2 cut(s)	10, 222
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	3 cut(s)	144, 286, 357
BstMBI	GATC	3 cut(s)	141, 283, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 424
BstV1I	GCAGC	2 cut(s)	81, 334
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	10, 222
BtsI	GCAGTG	2 cut(s)	357, 422
BtsIMutI	CAGTG	2 cut(s)	357, 422
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	6 cut(s)	12, 78, 276, 325, 388, 418
CviKI_1	RGCY	6 cut(s)	12, 78, 276, 325, 388, 418
DdeI	CTNAG	3 cut(s)	200, 368, 411
DpnI	GATC	3 cut(s)	143, 285, 356
DpnII	GATC	3 cut(s)	141, 283, 354
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco47III	AGCGCT	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	337
FaeI	CATG	1 cut(s)	76
FaiI	YATR	3 cut(s)	74, 181, 392
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	70, 323
FokI	GGATG	2 cut(s)	17, 229
Fsp4HI	GCNGC	2 cut(s)	70, 323
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	2 cut(s)	70, 323
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	56, 130, 134
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	2 cut(s)	373, 458
HpyCH4V	TGCA	3 cut(s)	8, 335, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 424
HpyF3I	CTNAG	3 cut(s)	200, 368, 411
HpySE526I	ACGT	2 cut(s)	373, 458
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	260
Kzo9I	GATC	3 cut(s)	141, 283, 354
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	3 cut(s)	105, 291, 413
Lsp1109I	GCAGC	2 cut(s)	81, 334
LweI	GCATC	3 cut(s)	127, 322, 344
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	373, 458
MaeIII	GTNAC	2 cut(s)	87, 241
MalI	GATC	3 cut(s)	143, 285, 356
MboI	GATC	3 cut(s)	141, 283, 354
MboII	GAAGA	3 cut(s)	260, 290, 395
MluCI	AATT	2 cut(s)	111, 264
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	52, 59, 305, 438
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	2 cut(s)	80, 345
MspCI	CTTAAG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	75, 424
NdeII	GATC	3 cut(s)	141, 283, 354
NlaIII	CATG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	378
PctI	GAATGC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	71, 324
Ppu21I	YACGTR	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	80, 345
SatI	GCNGC	2 cut(s)	70, 323
Sau3AI	GATC	3 cut(s)	141, 283, 354
Sau96I	GGNCC	1 cut(s)	275
SfaNI	GCATC	3 cut(s)	127, 322, 344
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	2 cut(s)	111, 264
SspMI	CTAG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	2 cut(s)	376, 461
TasI	AATT	2 cut(s)	111, 264
Tru1I	TTAA	2 cut(s)	80, 345
Tru9I	TTAA	2 cut(s)	80, 345
TscAI	CASTG	2 cut(s)	364, 429
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	69, 322
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	196, 233, 237
TspRI	CASTG	2 cut(s)	364, 429
Vha464I	CTTAAG	1 cut(s)	79
XspI	CTAG	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.