Rh6AG013300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000977
Physical Location & Seq
Forward (+)
1425985 .. 1428036
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG013300.1

Sequence Viewer

Length: 585 bp
ATGGCCCCCAAACTCAGAGGGATGGTACCCAAAACAGATAATCTCCTCCTAAAGATTGAGATCCTTGCAATTCTTCTTCTGGTAATCGTTCCTAATTTTACAAGGGAATCCATCATCGATTTCACTCGGTCAAGTTTTCTATCCTTGGGGATATCCTGCTATCGTCAACTTATTGGTACTACATCAACTCTGCCGCCATATTATCTCTGGTTGTTTTGGTTGGAGCGAGCTGTGAGCCTTTACCTCCTAATACTTTACCACAGAGCTAAAAAATTTTGGGGTATAGCTTTTGGCTTCTACTTGATGTCCACCATATGCAGTTCTTCCATTGTATACTTCATGCCTACAAGAAAATGGCAAGGACTTCCGAAAAACCCTAGCCCTAGGAAGCCTGACTATCTGTTCTGGATTGAGCGACTTGCAATAATGATTTTGGAACTCGACAGTACTGACCAAACTCCAAACAGTTTGTTCATAGCCAGGGGTCTCTTTTTTCTTACCAACAGTTGTTACAGTGTTGACTCCTATACACCAGCATTTATGAATAAGGGTCTCATATCTAAAGCTTACGCTCCTAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.39

Weight (kDa)

9.63

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 333
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 3 cut(s) 27, 178, 448
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 4 cut(s) 230, 266, 287, 566
AluI AGCT 4 cut(s) 230, 266, 287, 566
Alw26I GTCTC 2 cut(s) 491, 557
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 272
Asp718I GGTACC 1 cut(s) 25
AspA2I CCTAGG 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 383
BanI GGYRCC 1 cut(s) 25
BccI CCATC 2 cut(s) 16, 119
BciT130I CCWGG 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 491, 557
BfaI CTAG 2 cut(s) 378, 384
BisI GCNGC 1 cut(s) 194
BlnI CCTAGG 1 cut(s) 383
BlsI GCNGC 1 cut(s) 195
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 27
BmrFI CCNGG 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 59
BsaI GGTCTC 2 cut(s) 491, 557
BsaJI CCNNGG 3 cut(s) 144, 383, 480
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 144, 383, 480
BseGI GGATG 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 59
BseMII CTCAG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 491, 557
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 491, 557
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 6, 27
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 25
BspTNI GGTCTC 2 cut(s) 491, 557
BssECI CCNNGG 3 cut(s) 144, 383, 480
BssMI GATC 1 cut(s) 60
BssNAI GTATAC 1 cut(s) 334
BssT1I CCWWGG 2 cut(s) 144, 383
Bst1107I GTATAC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 4 cut(s) 446, 467, 506, 515
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 2 cut(s) 491, 557
BstMBI GATC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BstZ17I GTATAC 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 3 cut(s) 26, 177, 447
CviAII CATG 1 cut(s) 340
CviQI GTAC 3 cut(s) 26, 177, 447
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 144, 383
Eco31I GGTCTC 2 cut(s) 491, 557
Eco32I GATATC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 479
EcoRV GATATC 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 144, 383
ErhI CCWWGG 2 cut(s) 144, 383
FaeI CATG 1 cut(s) 343
FatI CATG 1 cut(s) 339
FauNDI CATATG 1 cut(s) 314
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 2 cut(s) 378, 384
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 343
HincII GTYRAC 2 cut(s) 167, 520
HindII GTYRAC 2 cut(s) 167, 520
HindIII AAGCTT 1 cut(s) 564
HinfI GANTC 2 cut(s) 107, 521
Hpy166II GTNNAC 4 cut(s) 167, 309, 334, 520
Hpy188I TCNGA 3 cut(s) 17, 369, 584
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 4 cut(s) 167, 309, 334, 520
HpyCH4III ACNGT 4 cut(s) 446, 467, 506, 515
HpyCH4V TGCA 3 cut(s) 68, 318, 422
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 343
KpnI GGTACC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 2 cut(s) 223, 577
LpnPI CCDG 8 cut(s) 65, 169, 193, 391, 405, 466, 493, 546
MaeI CTAG 2 cut(s) 378, 384
MaeIII GTNAC 1 cut(s) 509
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 65, 68, 315
MflI RGATCY 1 cut(s) 60
MluCI AATT 3 cut(s) 69, 94, 272
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 3 cut(s) 11, 56, 254
MspR9I CCNGG 1 cut(s) 481
MvaI CCWGG 1 cut(s) 481
NdeI CATATG 1 cut(s) 314
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 6, 27
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 6, 27
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 3 cut(s) 27, 178, 448
RsaNI GTAC 3 cut(s) 26, 177, 447
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 448
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 481
SetI ASST 5 cut(s) 232, 246, 268, 289, 568
Sse9I AATT 3 cut(s) 69, 94, 272
SsiI CCGC 1 cut(s) 194
SspMI CTAG 2 cut(s) 378, 384
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 2 cut(s) 144, 383
TaaI ACNGT 4 cut(s) 446, 467, 506, 515
TaqI TCGA 2 cut(s) 117, 441
TaqII GACCGA 1 cut(s) 117
TasI AATT 3 cut(s) 69, 94, 272
TatI WGTACW 1 cut(s) 446
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 1 cut(s) 520
TspDTI ATGAA 3 cut(s) 328, 463, 557
TspRI CASTG 1 cut(s) 520
XapI RAATTY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmaJI CCTAGG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 2 cut(s) 378, 384
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.