Rh1DG361400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000977
Physical Location & Seq
Forward (+)
58851428 .. 58855114
3687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG361400.1

Sequence Viewer

Length: 582 bp
ATGGGTCGGAGGACCAGGATTCAAAGACGAGCAGCGAGGATATTTAGTTTTTGGGGGGGGAGAATTTGGGACTGGAAACAAAGAAAACGACGAATCTTGCAAGAGCTTCTAACATGTAGATTTTCTGATAACCCTCTTGGTTTCTTATCTGACTGGAAATTGGATTTTACAGCTGCCCTCAACATTCTATATGTCTGGATTCTTAATATTTGGGATCTGTTTGCGACCTACCTTGCTGAGTCTAAGGTGCCTCAGGATGAAGATTCATATAAAAGCTGTCTTGCCGCCTTGACAATTAAAGAGGTTAAACAATATCAGTATATCAAAGATACAAAGCGAATTGCTTCTAAAACCTCAAGCCAAGGGTCTATTTTTTCCTACAAACAGTACTGTAACAAGTCCTATACACCAGCATTTATCAATAAGGGCCTCATATCTAAAGCTTACACTCCTAAACTCAGAGAAGCTGTTGAGGGTTTTCAAGCAGAGAAAAAGGAAGCCAAAATTGAGGATGAGCCACAAAAGGAGAAGTTTGAAGTTCACCAAGGAGAAAATAACGATTGGGAAAAGGAATTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.83

Weight (kDa)

9.38

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AciI CCGC 1 cut(s) 285
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 1 cut(s) 389
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 3 cut(s) 23, 482, 536
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 5 cut(s) 106, 173, 276, 443, 467
AluI AGCT 5 cut(s) 106, 173, 276, 443, 467
AlwI GGATC 1 cut(s) 222
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 2 cut(s) 32, 173
ApoI RAATTY 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 12, 427
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 12
AxyI CCTNAGG 1 cut(s) 252
BanI GGYRCC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 44, 160
BciT130I CCWGG 1 cut(s) 16
BisI GCNGC 3 cut(s) 33, 174, 285
BlsI GCNGC 3 cut(s) 34, 175, 286
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 12, 427
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 361, 544
Bse1I ACTGG 2 cut(s) 77, 158
Bse21I CCTNAGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 361, 544
BseGI GGATG 2 cut(s) 262, 517
BseMII CTCAG 3 cut(s) 228, 266, 472
BseNI ACTGG 2 cut(s) 77, 158
BseXI GCAGC 2 cut(s) 44, 160
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 247
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 429
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 3 cut(s) 229, 265, 471
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 247
BsrI ACTGG 2 cut(s) 77, 158
BssECI CCNNGG 2 cut(s) 361, 544
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 2 cut(s) 361, 544
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 387, 392
BstDEI CTNAG 4 cut(s) 237, 243, 252, 458
BstF5I GGATG 2 cut(s) 262, 517
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 44, 160
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu36I CCTNAGG 1 cut(s) 252
BsuRI GGCC 1 cut(s) 429
BtsCI GGATG 2 cut(s) 262, 517
Cfr13I GGNCC 2 cut(s) 12, 427
Csp6I GTAC 1 cut(s) 388
CviAII CATG 1 cut(s) 114
CviJI RGCY 9 cut(s) 106, 173, 276, 360, 429, 443, 467, 500, 517
CviKI_1 RGCY 9 cut(s) 106, 173, 276, 360, 429, 443, 467, 500, 517
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 4 cut(s) 237, 243, 252, 458
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 361, 544
Eco47I GGWCC 1 cut(s) 12
Eco81I CCTNAGG 1 cut(s) 252
EcoO109I RGGNCCY 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 2 cut(s) 361, 544
ErhI CCWWGG 2 cut(s) 361, 544
FaeI CATG 1 cut(s) 117
FaiI YATR 8 cut(s) 115, 190, 192, 268, 270, 321, 405, 434
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 113
Fnu4HI GCNGC 3 cut(s) 33, 174, 285
FokI GGATG 2 cut(s) 269, 524
Fsp4HI GCNGC 3 cut(s) 33, 174, 285
GluI GCNGC 3 cut(s) 33, 174, 285
HaeIII GGCC 1 cut(s) 429
Hin1II CATG 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 5 cut(s) 19, 93, 199, 239, 263
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 4 cut(s) 9, 127, 151, 461
Hpy188III TCNNGA 2 cut(s) 196, 254
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 1 cut(s) 93
HpyCH4III ACNGT 2 cut(s) 387, 392
HpyCH4V TGCA 1 cut(s) 100
HpyF3I CTNAG 4 cut(s) 237, 243, 252, 458
Hsp92II CATG 1 cut(s) 117
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 28, 58, 139, 181, 239, 423
Lsp1109I GCAGC 2 cut(s) 44, 160
MaeIII GTNAC 1 cut(s) 392
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 272
MflI RGATCY 1 cut(s) 214
MluCI AATT 6 cut(s) 63, 158, 294, 339, 504, 572
MlyI GAGTC 1 cut(s) 248
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 3 cut(s) 204, 297, 306
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 117
PciI ACATGT 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 4 cut(s) 19, 93, 199, 263
PkrI GCNGC 3 cut(s) 34, 175, 286
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 12, 427
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 3 cut(s) 204, 297, 306
SatI GCNGC 3 cut(s) 33, 174, 285
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 2 cut(s) 12, 427
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 16
SinI GGWCC 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 6 cut(s) 63, 158, 294, 339, 504, 572
SsiI CCGC 1 cut(s) 285
SspI AATATT 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 2 cut(s) 361, 544
TaaI ACNGT 2 cut(s) 387, 392
TasI AATT 6 cut(s) 63, 158, 294, 339, 504, 572
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 4 cut(s) 19, 93, 199, 263
Tru1I TTAA 3 cut(s) 204, 297, 306
Tru9I TTAA 3 cut(s) 204, 297, 306
TseI GCWGC 2 cut(s) 32, 173
TspDTI ATGAA 2 cut(s) 255, 273
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 63
XceI RCATGY 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.