pycom05g11650

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
15248027 .. 15249501
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11650.2

Sequence Viewer

Length: 1134 bp
ATGTTTTTCTATCTTTTGCAGGAAACTATCACGGGTGAACAATCAAAGATAGAGAAAGCTAGAATGGAGGATTTCCCACAAACAGACAAGTTGGAAGAAACTAACAAGGCTGAGAAATCAGACAAAGAGATGGCAAAAGTTGGCGATGAACTAAAAGAAAGTTTGGAAGTCCGAGAAGAATCACCAAAAGAGGAAAAAAGAAAATGGGAAGAGGATTTGGTGGAAGCTGATGACCAATTGAAGGAAAAGTCAGAAGTTGCAGAAGAGGCACCAAAAGAAGAAAATAACAGTTGGGAAGATGACTTGGGGGAAGCTGATGACCAATTGAAGGAAAAGTCAGAAGTTGCAGAAGAGGCACCAAAAGAAGAAAATAACAGTTGGGAAGATGATTGGGGGGAAGCTGATGAGCAATTGAAAGAAAAATTAGAAGTTGATCACCGACCAGCAGCAAAAGAAGAAGAAAATGTATGGGAAGACTGGCTTTTGCCAGAATTTGGAAGATTTGTCAACTGGGAAGATGTAAATATAGCTAATGATAACGGTAAATGGGGAGAAGAGTTGAGGCAAGCTGATGAAGCTTCTAGTTTCAATGACAACGGTAGCAAAGAGATTGAGGATAATTTGAAGGTCAAAACAGCCGAAAATGTAAGCATTGATAGTGAGGAAGTAGTTGCGGAAATTGAAGCTGAGAGACTGAAGGCTGAGATTGAGAATTTGAAGAGGGAGAAGAAAGCACTGGATGAAAAGTTGATTTTGGAGAGTCTTGTGTACGAAGATTCTCGCTGCGTGTGGGAAACACAAAATCAAAAGCTTAGTGCAACGCTTCATGAAGCATATCTGGAATCCGAAGGTTTGGTTAAGGAGTTAGAGAATCACTGCAAGTTGGTGAAAGAAATGGTGACGAGGTTTGATAGTTATGAAGAAGATGGCAGGAGATGGGAGCAAGAGAAGAGAGAAATGTCGGCAAAACTTGAAGCTCTAACTGCAGCTTCTGAAAAGGATAAAGTGTTGCGCAAAACTGCAAGGAAGATCGATCAGAAAAGAATGGGAAGAAGAGAAAGCTTCACTCACTCAAAGGCTTTCTGCAGCATATTTTGCGTGCAATTACTATTCTCGGGTTATAAAGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

44.08

Weight (kDa)

4.56

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
Acc16I TGCGCA 1 cut(s) 1013
AccB1I GGYRCC 2 cut(s) 268, 355
AccB7I CCANNNNNTGG 1 cut(s) 494
AciI CCGC 1 cut(s) 674
AcsI RAATTY 2 cut(s) 491, 712
AcuI CTGAAG 1 cut(s) 716
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 3 cut(s) 241, 328, 494
AgsI TTSAA 8 cut(s) 241, 328, 415, 589, 625, 683, 718, 974
Alw26I GTCTC 1 cut(s) 685
AlwNI CAGNNNCTG 1 cut(s) 992
Ama87I CYCGRG 1 cut(s) 1114
ApeKI GCWGC 4 cut(s) 446, 783, 986, 1086
ApoI RAATTY 2 cut(s) 491, 712
AspLEI GCGC 1 cut(s) 1014
AsuHPI GGTGA 5 cut(s) 47, 174, 428, 898, 910
AvaI CYCGRG 1 cut(s) 1114
BanI GGYRCC 2 cut(s) 268, 355
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 4 cut(s) 458, 770, 998, 1098
BccI CCATC 3 cut(s) 124, 920, 930
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 2 cut(s) 60, 582
BfmI CTRYAG 2 cut(s) 984, 1084
BisI GCNGC 4 cut(s) 447, 784, 987, 1087
BlsI GCNGC 4 cut(s) 448, 785, 988, 1088
BmeT110I CYCGRG 1 cut(s) 1114
BmiI GGNNCC 2 cut(s) 270, 357
BmrI ACTGGG 1 cut(s) 520
BmuI ACTGGG 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 1032
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 328, 494
Bse1I ACTGG 3 cut(s) 482, 515, 741
BseCI ATCGAT 1 cut(s) 1032
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 3 cut(s) 241, 328, 494
BseMII CTCAG 3 cut(s) 102, 678, 693
BseNI ACTGG 3 cut(s) 482, 515, 741
BseXI GCAGC 4 cut(s) 458, 770, 998, 1098
BshNI GGYRCC 2 cut(s) 268, 355
BshVI ATCGAT 1 cut(s) 1032
BsiHKCI CYCGRG 1 cut(s) 1114
BslI CCNNNNNNNGG 3 cut(s) 241, 328, 494
BsmAI GTCTC 1 cut(s) 685
BsoBI CYCGRG 1 cut(s) 1114
Bsp143I GATC 3 cut(s) 433, 1029, 1033
BspACI CCGC 1 cut(s) 674
BspCNI CTCAG 3 cut(s) 103, 679, 694
BspDI ATCGAT 1 cut(s) 1032
BspHI TCATGA 1 cut(s) 826
BspLI GGNNCC 2 cut(s) 270, 357
BspMAI CTGCAG 2 cut(s) 988, 1088
BspT107I GGYRCC 2 cut(s) 268, 355
BsrI ACTGG 3 cut(s) 482, 515, 741
BssMI GATC 3 cut(s) 433, 1029, 1033
Bst4CI ACNGT 4 cut(s) 290, 377, 542, 599
Bst6I CTCTTC 7 cut(s) 204, 258, 345, 549, 713, 944, 1048
BstAPI GCANNNNNTGC 1 cut(s) 1095
BstC8I GCNNGC 2 cut(s) 567, 1100
BstDEI CTNAG 4 cut(s) 111, 687, 702, 812
BstF5I GGATG 1 cut(s) 745
BstHHI GCGC 1 cut(s) 1014
BstKTI GATC 3 cut(s) 436, 1032, 1036
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 3 cut(s) 433, 1029, 1033
BstMWI GCNNNNNNNGC 5 cut(s) 266, 353, 575, 983, 1095
BstSFI CTRYAG 2 cut(s) 984, 1084
BstV1I GCAGC 4 cut(s) 458, 770, 998, 1098
BstV2I GAAGAC 1 cut(s) 480
Bsu15I ATCGAT 1 cut(s) 1032
BsuTUI ATCGAT 1 cut(s) 1032
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 745
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 2 cut(s) 734, 874
Cac8I GCNNGC 2 cut(s) 567, 1100
CaiI CAGNNNCTG 1 cut(s) 992
CciI TCATGA 1 cut(s) 826
CfoI GCGC 1 cut(s) 1014
ClaI ATCGAT 1 cut(s) 1032
Csp6I GTAC 1 cut(s) 769
CviAII CATG 1 cut(s) 827
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 4 cut(s) 111, 687, 702, 812
DpnI GATC 3 cut(s) 435, 1031, 1035
DpnII GATC 3 cut(s) 433, 1029, 1033
Eam1104I CTCTTC 7 cut(s) 204, 258, 345, 549, 713, 944, 1048
EarI CTCTTC 7 cut(s) 204, 258, 345, 549, 713, 944, 1048
Eco57I CTGAAG 1 cut(s) 716
Eco88I CYCGRG 1 cut(s) 1114
FaeI CATG 1 cut(s) 830
FaiI YATR 8 cut(s) 469, 527, 828, 835, 918, 1091, 1122, 1132
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FatI CATG 1 cut(s) 826
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 4 cut(s) 447, 784, 987, 1087
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 4 cut(s) 447, 784, 987, 1087
FspBI CTAG 2 cut(s) 60, 582
FspI TGCGCA 1 cut(s) 1013
GlaI GCGC 1 cut(s) 1013
GluI GCNGC 4 cut(s) 447, 784, 987, 1087
HhaI GCGC 1 cut(s) 1014
Hin1II CATG 1 cut(s) 830
Hin6I GCGC 1 cut(s) 1012
HinP1I GCGC 1 cut(s) 1012
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 3 cut(s) 576, 809, 1060
HinfI GANTC 5 cut(s) 179, 760, 776, 842, 871
HphI GGTGA 5 cut(s) 47, 174, 428, 898, 910
Hpy166II GTNNAC 3 cut(s) 38, 508, 769
Hpy188I TCNGA 7 cut(s) 121, 173, 253, 340, 847, 994, 1038
Hpy188III TCNNGA 2 cut(s) 827, 839
Hpy8I GTNNAC 3 cut(s) 38, 508, 769
HpyAV CCTTC 5 cut(s) 235, 322, 619, 691, 842
HpyCH4III ACNGT 4 cut(s) 290, 377, 542, 599
HpyCH4V TGCA 9 cut(s) 19, 260, 347, 818, 879, 986, 1022, 1086, 1102
HpyF10VI GCNNNNNNNGC 5 cut(s) 266, 353, 575, 983, 1095
HpyF3I CTNAG 4 cut(s) 111, 687, 702, 812
Hsp92II CATG 1 cut(s) 830
HspAI GCGC 1 cut(s) 1012
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 433, 1029, 1033
LmnI GCTCC 1 cut(s) 940
LpnPI CCDG 8 cut(s) 5, 456, 463, 496, 501, 722, 824, 916
Lsp1109I GCAGC 4 cut(s) 458, 770, 998, 1098
MaeI CTAG 2 cut(s) 60, 582
MaeIII GTNAC 1 cut(s) 898
MalI GATC 3 cut(s) 435, 1031, 1035
MboI GATC 3 cut(s) 433, 1029, 1033
MfeI CAATTG 3 cut(s) 236, 323, 410
MluCI AATT 9 cut(s) 236, 323, 410, 422, 491, 619, 678, 712, 1103
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 858
MunI CAATTG 3 cut(s) 236, 323, 410
MwoI GCNNNNNNNGC 5 cut(s) 266, 353, 575, 983, 1095
NdeII GATC 3 cut(s) 433, 1029, 1033
NlaIII CATG 1 cut(s) 830
NlaIV GGNNCC 2 cut(s) 270, 357
NmuCI GTSAC 1 cut(s) 898
NsbI TGCGCA 1 cut(s) 1013
PagI TCATGA 1 cut(s) 826
PfeI GAWTC 4 cut(s) 179, 776, 842, 871
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 4 cut(s) 448, 785, 988, 1088
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PsiI TTATAA 1 cut(s) 1122
PspN4I GGNNCC 2 cut(s) 270, 357
PstI CTGCAG 2 cut(s) 988, 1088
PstNI CAGNNNCTG 1 cut(s) 992
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 4 cut(s) 447, 784, 987, 1087
Sau3AI GATC 3 cut(s) 433, 1029, 1033
SchI GAGTC 1 cut(s) 769
SfcI CTRYAG 2 cut(s) 984, 1084
Sse9I AATT 9 cut(s) 236, 323, 410, 422, 491, 619, 678, 712, 1103
SsiI CCGC 1 cut(s) 674
SspMI CTAG 2 cut(s) 60, 582
TaaI ACNGT 4 cut(s) 290, 377, 542, 599
TaqI TCGA 1 cut(s) 1032
TasI AATT 9 cut(s) 236, 323, 410, 422, 491, 619, 678, 712, 1103
TfiI GAWTC 4 cut(s) 179, 776, 842, 871
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 2 cut(s) 741, 881
TseFI GTSAC 1 cut(s) 898
TseI GCWGC 4 cut(s) 446, 783, 986, 1086
Tsp45I GTSAC 1 cut(s) 898
TspDTI ATGAA 6 cut(s) 162, 588, 756, 815, 843, 933
TspRI CASTG 2 cut(s) 741, 881
Van91I CCANNNNNTGG 1 cut(s) 494
XapI RAATTY 2 cut(s) 491, 712
XspI CTAG 2 cut(s) 60, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.