Rh7DG330600

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000977
Physical Location & Seq
Forward (+)
40221380 .. 40269637
48258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG330600.1

Sequence Viewer

Length: 345 bp
ATGGGTGTGTTCTTTATTGATGTGCTCCTCAAACTTCCAAATGAGTCTTCTTCTCTTGGATCTGCTCTGAAGCAACACTGCACTCTATCTGTGTCATCTAGCCAATCTTTTCCTCCAAAGTCATCCGACTCGGTGGGTAAACTGGAAACTAATATATTGACCTGGCCTCCCAATAAGTATCTGGACTTTGTTCTCATTCTCAATAAAAAGGTTGATGCCTACCTTCTCAAGTTTTCCCCTATTACGGCTTTTGTCATCTGCATACGTATTAGTGCAATAATGTTTGCGAGAAGAGGTCCAAGAGGCTGTGCTTATGCAGATCCAGAACGACATGCACCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

9.3

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 67, 314
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 244
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
Alw21I GWGCWC 1 cut(s) 27
AlwI GGATC 2 cut(s) 67, 314
AoxI GGCC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 163
BfaI CTAG 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 64
BshFI GGCC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 244
BsnI GGCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 2 cut(s) 59, 319
BspANI GGCC 1 cut(s) 166
BspPI GGATC 2 cut(s) 67, 314
BsrI ACTGG 1 cut(s) 147
BssMI GATC 2 cut(s) 59, 319
Bst2UI CCWGG 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 286
BstBAI YACGTR 1 cut(s) 266
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 2 cut(s) 62, 322
BstMBI GATC 2 cut(s) 59, 319
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 161
BstSNI TACGTA 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 59, 319
BstYI RGATCY 2 cut(s) 59, 319
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 296
CviAII CATG 1 cut(s) 332
CviJI RGCY 4 cut(s) 102, 166, 248, 306
CviKI_1 RGCY 4 cut(s) 102, 166, 248, 306
DpnI GATC 2 cut(s) 61, 321
DpnII GATC 2 cut(s) 59, 319
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco105I TACGTA 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 161
FaeI CATG 1 cut(s) 335
FaiI YATR 4 cut(s) 155, 263, 315, 333
FatI CATG 1 cut(s) 331
FokI GGATG 1 cut(s) 109
FspBI CTAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 166
Hin1II CATG 1 cut(s) 335
HinfI GANTC 2 cut(s) 44, 128
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 69, 127
Hpy188III TCNNGA 2 cut(s) 182, 323
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 81, 261, 275, 317, 335
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 2 cut(s) 59, 319
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 5 cut(s) 128, 148, 167, 175, 336
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 265
MalI GATC 2 cut(s) 61, 321
MboI GATC 2 cut(s) 59, 319
MboII GAAGA 3 cut(s) 39, 42, 303
MflI RGATCY 2 cut(s) 59, 319
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 2 cut(s) 53, 122
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 38, 123, 177, 287, 296
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
NdeII GATC 2 cut(s) 59, 319
NlaIII CATG 1 cut(s) 335
NspI RCATGY 1 cut(s) 335
PleI GAGTC 2 cut(s) 52, 122
PpsI GAGTC 2 cut(s) 52, 122
Ppu21I YACGTR 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 2 cut(s) 59, 319
Sau3AI GATC 2 cut(s) 59, 319
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 53, 122
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 164, 213, 225, 268, 298, 340
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 266
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 161
TaiI ACGT 1 cut(s) 268
TscAI CASTG 1 cut(s) 83
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 296
XceI RCATGY 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.