Rh6DG161200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000977
Physical Location & Seq
Reverse (-)
24207312 .. 24209014
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG161200.1

Sequence Viewer

Length: 657 bp
ATGTATGCTTTGAAAAGAGATGATATTCTTGCTTATCCAATTAGCTCTGTGTGTCAACAGTTGGAGTTTCCCAGGTTTCACGCTTTGTGCAGGGGGAGAATTTGGGACTGGAAACAAAGAAAACGACGAATCTTGGTATTACTGCTGGTGTGGCTGCTCTGGTTTTTGGATCCAAGAAGTTACCTGAAGGGGCAAGAGTTTAGGAAAGACTATCAAGAGCTTCTAACATGTAGATTTTCTGATAACCCTCTTGTTTTCTTATCTGACTGGAAATTGAATTTTACAGCTGCCCTCAACATTCTATATGTCTGGATTCTTAATATTTGGGATCTGTTTGTGACCCACCTTGCTGAGTCTAAGGTGCCTCAGGATGAAGATTCATATAAAAGCTGTCTTGCTGCCTTGACAATTAAAGAGGTTGAACAATATCAGTATATCAAAGATACAAGGCGAATTGCTTCTAAAACCTCAAGATACAGACTTCAGAAAGCAGCTGTATTTCTTGATAACAACACATATCTGCATTTTTTCACCTACATATTGATATTCCTGAGTCTCCCATGCTTGCAAATACTATTATACTCAGGCCCGATGACACATTGTAGCCATCAATCAGAAAGTTCAAACCAAACCAATTTTATAAATTTTTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

26.1

Weight (kDa)

8.98

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 361
AclWI GGATC 3 cut(s) 164, 177, 336
AcsI RAATTY 3 cut(s) 99, 277, 643
AcuI CTGAAG 2 cut(s) 206, 467
AflIII ACRYGT 1 cut(s) 227
AgsI TTSAA 4 cut(s) 13, 277, 422, 624
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 5 cut(s) 45, 220, 287, 390, 494
AluI AGCT 5 cut(s) 45, 220, 287, 390, 494
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 3 cut(s) 164, 177, 336
AoxI GGCC 1 cut(s) 586
ApeKI GCWGC 4 cut(s) 154, 287, 398, 491
ApoI RAATTY 3 cut(s) 99, 277, 643
Asp700I GAANNNNTTC 1 cut(s) 457
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 523
AxyI CCTNAGG 1 cut(s) 366
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 361
BbvI GCAGC 4 cut(s) 141, 274, 385, 503
BccI CCATC 1 cut(s) 615
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 560
BisI GCNGC 4 cut(s) 155, 288, 399, 492
BlsI GCNGC 4 cut(s) 156, 289, 400, 493
Bme1390I CCNGG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 171, 363
BmrFI CCNGG 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 113, 272
Bse21I CCTNAGG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 376
BseMII CTCAG 4 cut(s) 342, 380, 542, 597
BseNI ACTGG 2 cut(s) 113, 272
BseXI GCAGC 4 cut(s) 141, 274, 385, 503
BsgI GTGCAG 1 cut(s) 109
BshFI GGCC 1 cut(s) 588
BshNI GGYRCC 1 cut(s) 361
BslFI GGGAC 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 588
Bsp143I GATC 2 cut(s) 169, 328
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 4 cut(s) 343, 379, 543, 596
BspLI GGNNCC 2 cut(s) 171, 363
BspPI GGATC 3 cut(s) 164, 177, 336
BspT107I GGYRCC 1 cut(s) 361
BsrI ACTGG 2 cut(s) 113, 272
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 2 cut(s) 169, 328
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 5 cut(s) 351, 357, 366, 551, 583
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 2 cut(s) 172, 331
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 2 cut(s) 169, 328
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 141, 274, 385, 503
BstX2I RGATCY 2 cut(s) 169, 328
BstYI RGATCY 2 cut(s) 169, 328
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 1 cut(s) 588
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 587
CviAII CATG 2 cut(s) 228, 561
CviJI RGCY 8 cut(s) 45, 154, 220, 287, 390, 494, 588, 606
CviKI_1 RGCY 8 cut(s) 45, 154, 220, 287, 390, 494, 588, 606
DdeI CTNAG 5 cut(s) 351, 357, 366, 551, 583
DpnI GATC 2 cut(s) 171, 330
DpnII GATC 2 cut(s) 169, 328
Eco57I CTGAAG 2 cut(s) 206, 467
Eco81I CCTNAGG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 71
FaeI CATG 2 cut(s) 231, 564
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 227, 560
Fnu4HI GCNGC 4 cut(s) 155, 288, 399, 492
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 4 cut(s) 155, 288, 399, 492
GluI GCNGC 4 cut(s) 155, 288, 399, 492
HaeIII GGCC 1 cut(s) 588
Hin1II CATG 2 cut(s) 231, 564
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 5 cut(s) 129, 313, 353, 377, 553
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 4 cut(s) 241, 265, 486, 616
Hpy188III TCNNGA 6 cut(s) 215, 310, 368, 471, 503, 550
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 90, 523, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 5 cut(s) 351, 357, 366, 551, 583
Hsp92II CATG 2 cut(s) 231, 564
Kzo9I GATC 2 cut(s) 169, 328
Lsp1109I GCAGC 4 cut(s) 141, 274, 385, 503
MaeIII GTNAC 2 cut(s) 179, 337
MalI GATC 2 cut(s) 171, 330
MboI GATC 2 cut(s) 169, 328
MboII GAAGA 1 cut(s) 386
MflI RGATCY 2 cut(s) 169, 328
MluCI AATT 8 cut(s) 39, 99, 272, 277, 408, 453, 634, 643
MlyI GAGTC 2 cut(s) 362, 562
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 5 cut(s) 258, 302, 375, 409, 478
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 3 cut(s) 318, 411, 650
MspA1I CMGCKG 2 cut(s) 287, 494
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 2 cut(s) 169, 328
NlaIII CATG 2 cut(s) 231, 564
NlaIV GGNNCC 2 cut(s) 171, 363
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 231
PciI ACATGT 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 129, 313, 377
PkrI GCNGC 4 cut(s) 156, 289, 400, 493
PleI GAGTC 2 cut(s) 361, 561
PpsI GAGTC 2 cut(s) 361, 561
PscI ACATGT 1 cut(s) 227
PsiI TTATAA 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 171, 363
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 2 cut(s) 169, 328
PvuII CAGCTG 2 cut(s) 287, 494
SaqAI TTAA 3 cut(s) 318, 411, 650
SatI GCNGC 4 cut(s) 155, 288, 399, 492
Sau3AI GATC 2 cut(s) 169, 328
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 2 cut(s) 362, 562
ScrFI CCNGG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 8 cut(s) 39, 99, 272, 277, 408, 453, 634, 643
SspI AATATT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 60
TasI AATT 8 cut(s) 39, 99, 272, 277, 408, 453, 634, 643
TfiI GAWTC 3 cut(s) 129, 313, 377
Tru1I TTAA 3 cut(s) 318, 411, 650
Tru9I TTAA 3 cut(s) 318, 411, 650
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 4 cut(s) 154, 287, 398, 491
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 369, 387
XapI RAATTY 3 cut(s) 99, 277, 643
XceI RCATGY 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.