Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029635.1

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Forward (+)

13510 .. 14416

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029635.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgtggtcggcacactcatcagcatgtgcttttgtggataaatgcggaaggagaaggctcatgatcatttccatgttcggaatcatcagttgcctcatcgtgttagctggagtattcttctatgccgaagctcattctccaactattagccacttcaccacttggaatccaatcactttgctggccccaggagtcaatgccatgaagaacatagggtatggtactctaaagggtgtcctagcaaaattgagatatatatatccattgagatacagaggaactggtggagggattgccgcagtttccaactggactgcaaatctcattgtgagtgagacatacttaaccctcactaaggaactaggttcagctggaaccttcctcctatttgttggattttttgccatcggacttgtattcatttacttgccggttcctgaaaccaaaggaatgcaattcgaagaggtcgagaaattgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

9.24

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	45, 297
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	107, 131, 371
AluI	AGCT	3 cut(s)	107, 131, 371
Alw26I	GTCTC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	148
AsuII	TTCGAA	1 cut(s)	459
BccI	CCATC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	3 cut(s)	239, 362, 481
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	186, 376, 435
BmrFI	CCNGG	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	286, 314
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseNI	ACTGG	2 cut(s)	286, 314
BshFI	GGCC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	2 cut(s)	45, 297
BspANI	GGCC	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	186, 376, 435
BspT104I	TTCGAA	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	286, 314
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	456
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	354
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	63
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	4 cut(s)	24, 61, 73, 202
CviJI	RGCY	6 cut(s)	58, 107, 131, 150, 185, 371
CviKI_1	RGCY	6 cut(s)	58, 107, 131, 150, 185, 371
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	4 cut(s)	27, 64, 76, 205
FatI	CATG	4 cut(s)	23, 60, 72, 201
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	3 cut(s)	239, 362, 481
GluI	GCNGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	4 cut(s)	27, 64, 76, 205
HinfI	GANTC	3 cut(s)	81, 166, 192
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	80, 410
Hpy188III	TCNNGA	3 cut(s)	61, 437, 469
HpyAV	CCTTC	3 cut(s)	42, 48, 388
HpyCH4V	TGCA	2 cut(s)	317, 454
HpyF3I	CTNAG	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	27, 64, 76, 205
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	9 cut(s)	93, 167, 174, 201, 267, 295, 357, 444, 450
MaeI	CTAG	3 cut(s)	239, 362, 481
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	3 cut(s)	109, 217, 473
MluCI	AATT	3 cut(s)	245, 455, 473
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	3 cut(s)	164, 330, 373
MnlI	CCTC	6 cut(s)	104, 269, 281, 359, 392, 457
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	2 cut(s)	22, 71
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	4 cut(s)	27, 64, 76, 205
NlaIV	GGNNCC	3 cut(s)	186, 376, 435
NspI	RCATGY	1 cut(s)	27
NspV	TTCGAA	1 cut(s)	459
PagI	TCATGA	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	81, 166
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	186, 376, 435
PspPI	GGNCC	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	22, 71
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	6 cut(s)	109, 133, 367, 373, 380, 468
SfuI	TTCGAA	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	22, 71
Sse9I	AATT	3 cut(s)	245, 455, 473
SsiI	CCGC	2 cut(s)	45, 297
SspMI	CTAG	3 cut(s)	239, 362, 481
StyD4I	CCNGG	1 cut(s)	187
TaqI	TCGA	2 cut(s)	459, 468
TasI	AATT	3 cut(s)	245, 455, 473
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	81, 166
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	218, 409
XagI	CCTNNNNNAGG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	3 cut(s)	239, 362, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.