Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

23100744 .. 23106639

Gene Structure 5896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCACAACAAGACAAGTGAAAGGACTTACAGGGCTTTGGTTCCAGTTTTCTGTAATGGGTCGAGCTCAAGCCATTGGTGCGTTTCTGGTGCTTGTGTTAGTCCAGTTCTTTGTTATTGCAGCAGAGGCAAACACTCAGGAATGGGGAGAATTTGGGACTGGAAACAAAGAAAACGACGAATCTTGGTATTACTGCTGGTGTGGCTGCTCTGGTTTTTGGATCCAAGAAGTTACCTGAAGGGGCAAGAGTTTAGGAAAGACTATCAAGAGCTTCTAACATGTAGATTTTCTGATAACCCTCTTGTTTTCTTATCTGACTGGAAATTGAATTTTACAGCTGCCCTCAACATTCTATATGTCTGGATTCTTAATATTTGGGATCTGTTTGTGACCCACCTTGCTGAGTCTAAGGTGCCTCAGGATGAAGATTCATATAAAAGCTGTCTTGCTGCCTTGACAATTAAAGAGGTTGAACAATATCAGTATATCAAAGATACAAGGCGAATTGCTTCTAAAACCTCAAGAATTTTTGACAGAAACAATCTAAGTGGTAGCATCCCTTCAACTGTTGGACTTGTTCAGACATTGCTGGCGGTTGGGTGCAAGACAAAGAGGGACATAGTTTGTCCTACCGTCAAAAATGGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.92

Weight (kDa)

9.39

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	3 cut(s)	215, 228, 387
AcsI	RAATTY	3 cut(s)	150, 328, 525
AcuI	CTGAAG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	328, 473, 564
AluBI	AGCT	4 cut(s)	66, 271, 338, 441
AluI	AGCT	4 cut(s)	66, 271, 338, 441
Alw21I	GWGCWC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	215, 228, 387
ApeKI	GCWGC	4 cut(s)	120, 205, 338, 449
ApoI	RAATTY	3 cut(s)	150, 328, 525
Asp700I	GAANNNNTTC	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	417
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	544, 576
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	132, 192, 325, 436
BfaI	CTAG	1 cut(s)	649
BisI	GCNGC	4 cut(s)	121, 206, 339, 450
BlsI	GCNGC	4 cut(s)	122, 207, 340, 451
BmiI	GGNNCC	3 cut(s)	42, 222, 414
BmsI	GCATC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	52, 505
Bse1I	ACTGG	4 cut(s)	44, 104, 164, 323
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	584
BseGI	GGATG	2 cut(s)	427, 555
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	3 cut(s)	150, 393, 431
BseNI	ACTGG	4 cut(s)	44, 104, 164, 323
BseXI	GCAGC	4 cut(s)	132, 192, 325, 436
BshNI	GGYRCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	170, 629
BsmFI	GGGAC	2 cut(s)	170, 629
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	220, 379
BspACI	CCGC	1 cut(s)	593
BspCNI	CTCAG	3 cut(s)	149, 394, 430
BspLI	GGNNCC	3 cut(s)	42, 222, 414
BspPI	GGATC	3 cut(s)	215, 228, 387
BspT107I	GGYRCC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	4 cut(s)	44, 104, 164, 323
BssMI	GATC	2 cut(s)	220, 379
Bst4CI	ACNGT	2 cut(s)	568, 634
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	5 cut(s)	136, 402, 408, 417, 545
BstF5I	GGATG	2 cut(s)	427, 555
BstKTI	GATC	2 cut(s)	223, 382
BstMBI	GATC	2 cut(s)	220, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 126, 202
BstNSI	RCATGY	1 cut(s)	282
BstV1I	GCAGC	4 cut(s)	132, 192, 325, 436
BstX2I	RGATCY	2 cut(s)	220, 379
BstYI	RGATCY	2 cut(s)	220, 379
Bsu36I	CCTNAGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	427, 555
Cac8I	GCNNGC	1 cut(s)	591
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	7 cut(s)	35, 66, 72, 205, 271, 338, 441
CviKI_1	RGCY	7 cut(s)	35, 66, 72, 205, 271, 338, 441
DdeI	CTNAG	5 cut(s)	136, 402, 408, 417, 545
DpnI	GATC	2 cut(s)	222, 381
DpnII	GATC	2 cut(s)	220, 379
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	1 cut(s)	282
FaiI	YATR	7 cut(s)	280, 355, 357, 433, 435, 486, 620
FaqI	GGGAC	2 cut(s)	170, 629
FatI	CATG	1 cut(s)	278
Fnu4HI	GCNGC	4 cut(s)	121, 206, 339, 450
FokI	GGATG	2 cut(s)	434, 542
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	121, 206, 339, 450
FspBI	CTAG	1 cut(s)	649
GluI	GCNGC	4 cut(s)	121, 206, 339, 450
Hin1II	CATG	1 cut(s)	282
HinfI	GANTC	4 cut(s)	180, 364, 404, 428
Hpy188I	TCNGA	3 cut(s)	292, 316, 582
Hpy188III	TCNNGA	5 cut(s)	138, 266, 361, 419, 522
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	232, 570
HpyCH4III	ACNGT	2 cut(s)	568, 634
HpyCH4V	TGCA	3 cut(s)	4, 120, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 126, 202
HpyF3I	CTNAG	5 cut(s)	136, 402, 408, 417, 545
Hsp92II	CATG	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	220, 379
Lsp1109I	GCAGC	4 cut(s)	132, 192, 325, 436
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	1 cut(s)	649
MaeIII	GTNAC	3 cut(s)	230, 388, 644
MalI	GATC	2 cut(s)	222, 381
MboI	GATC	2 cut(s)	220, 379
MboII	GAAGA	1 cut(s)	437
MflI	RGATCY	2 cut(s)	220, 379
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	6 cut(s)	150, 323, 328, 459, 504, 525
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	7 cut(s)	119, 309, 353, 426, 460, 529, 606
MroXI	GAANNNNTTC	1 cut(s)	508
MseI	TTAA	2 cut(s)	369, 462
MspA1I	CMGCKG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	78, 126, 202
NdeII	GATC	2 cut(s)	220, 379
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	3 cut(s)	42, 222, 414
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	282
PciI	ACATGT	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	180, 364, 428
PkrI	GCNGC	4 cut(s)	122, 207, 340, 451
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PscI	ACATGT	1 cut(s)	278
Psp124BI	GAGCTC	1 cut(s)	68
PspN4I	GGNNCC	3 cut(s)	42, 222, 414
PsuI	RGATCY	2 cut(s)	220, 379
PvuII	CAGCTG	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	369, 462
SatI	GCNGC	4 cut(s)	121, 206, 339, 450
Sau3AI	GATC	2 cut(s)	220, 379
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	9 cut(s)	68, 237, 273, 340, 399, 414, 443, 471, 521
SfaNI	GCATC	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	67, 520
SmoI	CTYRAG	2 cut(s)	67, 520
Sse9I	AATT	6 cut(s)	150, 323, 328, 459, 504, 525
SsiI	CCGC	1 cut(s)	593
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	649
SstI	GAGCTC	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	568, 634
TaqI	TCGA	1 cut(s)	62
TasI	AATT	6 cut(s)	150, 323, 328, 459, 504, 525
TfiI	GAWTC	3 cut(s)	180, 364, 428
Tru1I	TTAA	2 cut(s)	369, 462
Tru9I	TTAA	2 cut(s)	369, 462
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	4 cut(s)	120, 205, 338, 449
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	420, 438
XapI	RAATTY	3 cut(s)	150, 328, 525
XceI	RCATGY	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	508
XspI	CTAG	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.