Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000977

Physical Location & Seq

Genomic Coordinates Reverse (-)

17366034 .. 17369205

Gene Structure 3172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTTGCGAGAAGTGGTTCTTCTATTTACACTGCTGGTGCTGAAGGGATGATTTATGAAATCGATTCACTGACAGCAAAGAGTAAAAGGTTTCTGTTTAGTCTGGAGTTTGTATATATTGAAGTTAGTACAGCGAATCTTGGTATTATTGCTGGTGTGGCTGCTCTAATTTTGGGATCCAAGAAGTTACCTGAATTGGGCAAGAGACAAATTTGTCATTCGGCTCTGAGTTCTTTGCTTTGGTTGCACGCACTAAAAGAGACAACTAAGATCTTTAGCGAAGAGATTCTGAATCCAAGAGCTCTCTTTTCTCAGCACGACCTTGTGAACCAACGTTGTATCGATGCTGCTGACGTCGTGGGTGCGGATGAGTCTGCACTCTGCAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.11

Weight (kDa)

5.88

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000977)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01110 FvH4_2g01110 FvH4_2g01110
malus_domestica	MD10G1335200.v1.1
prunus_persica	Prupe.8G166200_v2.0.a1
pyrus_communis	pycom05g11650 pycom10g28500
rosa_chinensis	RchiOBHm_Chr6g0251681
rosa_laevigata	RLG00000004518 RLG00000012460 RLG00000015438 RLG00000027972 RLG00000031982 RLG00000032117
rosa_multiflora	Rmu_co8207036.1_g000001 Rmu_co8236391.1_g000001 Rmu_sc0000698.1_g000101 Rmu_sc0001382.1_g000034 Rmu_sc0004931.1_g000001 Rmu_sc0029635.1_g000001 Rmu_ssc0000213.1_g000084 Rmu_ssc0000213.1_g000085
rosa_roxburghii	Rroxscaffold_1G00046000 Rroxscaffold_1G00062040 Rroxscaffold_3G00260950 Rroxscaffold_5G00366590 Rroxscaffold_7G00177330 Rroxscaffold_7G00216480
rosa_rugosa	Rorug04G0198700 Rorug05G0134400 Rorug05G0503400
rosa_samantha	Rh1BG329100 Rh1CG342500 Rh1CG342700 Rh1CG344000 Rh1CG344100 Rh1DG359000 Rh1DG359200 Rh1DG359400 Rh1DG359900 Rh1DG360100 Rh1DG360500 Rh1DG360800 Rh1DG361300 Rh1DG361400 Rh1DG361500 Rh3BG297300 Rh4AG255700 Rh4BG261100 Rh5BG110600 Rh5CG296200 Rh6AG013300 Rh6AG013400 Rh6AG013500 Rh6BG012300 Rh6BG012400 Rh6CG009700 Rh6CG169400 Rh6DG010700 Rh6DG161200 Rh7AG267800 Rh7DG115200 Rh7DG330600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	213
AatII	GACGTC	1 cut(s)	357
AciI	CCGC	1 cut(s)	365
AclI	AACGTT	1 cut(s)	334
AclWI	GGATC	2 cut(s)	171, 184
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	122
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	199, 254
AlwI	GGATC	2 cut(s)	171, 184
ApeKI	GCWGC	3 cut(s)	161, 347, 384
ApoI	RAATTY	1 cut(s)	210
Asp700I	GAANNNNTTC	2 cut(s)	16, 285
BamHI	GGATCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	148, 334
BcoDI	GTCTC	2 cut(s)	199, 254
BfmI	CTRYAG	1 cut(s)	382
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	3 cut(s)	162, 348, 385
BlsI	GCNGC	3 cut(s)	163, 349, 386
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	125
Bsa29I	ATCGAT	2 cut(s)	63, 342
BsaHI	GRCGYC	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseCI	ATCGAT	2 cut(s)	63, 342
BseGI	GGATG	2 cut(s)	54, 373
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	2 cut(s)	218, 326
BseXI	GCAGC	2 cut(s)	148, 334
BsgI	GTGCAG	1 cut(s)	360
BshVI	ATCGAT	2 cut(s)	63, 342
BsiHKAI	GWGCWC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	199, 254
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	176, 270
BspACI	CCGC	1 cut(s)	365
BspCNI	CTCAG	2 cut(s)	219, 325
BspDI	ATCGAT	2 cut(s)	63, 342
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	386
BspPI	GGATC	2 cut(s)	171, 184
BssMI	GATC	2 cut(s)	176, 270
BssNI	GRCGYC	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	227, 267, 312
BstF5I	GGATG	2 cut(s)	54, 373
BstKTI	GATC	2 cut(s)	179, 273
BstMAI	GTCTC	2 cut(s)	199, 254
BstMBI	GATC	2 cut(s)	176, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 244
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	148, 334
BstX2I	RGATCY	2 cut(s)	176, 270
BstYI	RGATCY	2 cut(s)	176, 270
Bsu15I	ATCGAT	2 cut(s)	63, 342
BsuTUI	ATCGAT	2 cut(s)	63, 342
BtsCI	GGATG	2 cut(s)	54, 373
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 68
Cac8I	GCNNGC	1 cut(s)	249
ClaI	ATCGAT	2 cut(s)	63, 342
Csp6I	GTAC	1 cut(s)	129
CviJI	RGCY	3 cut(s)	161, 224, 302
CviKI_1	RGCY	3 cut(s)	161, 224, 302
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	3 cut(s)	227, 267, 312
DpnI	GATC	2 cut(s)	178, 272
DpnII	GATC	2 cut(s)	176, 270
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	304
FaiI	YATR	3 cut(s)	57, 115, 117
FalI	AAGNNNNNCTT	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	162, 348, 385
FokI	GGATG	2 cut(s)	61, 380
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	162, 348, 385
GluI	GCNGC	3 cut(s)	162, 348, 385
GsuI	CTGGAG	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	354
HinfI	GANTC	5 cut(s)	65, 136, 286, 292, 371
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	228, 291
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	38
HpyCH4IV	ACGT	2 cut(s)	334, 354
HpyCH4V	TGCA	3 cut(s)	247, 377, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 244
HpyF3I	CTNAG	3 cut(s)	227, 267, 312
HpySE526I	ACGT	2 cut(s)	334, 354
Hsp92I	GRCGYC	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	176, 270
LpnPI	CCDG	4 cut(s)	21, 89, 138, 204
Lsp1109I	GCAGC	2 cut(s)	148, 334
LweI	GCATC	1 cut(s)	334
MaeII	ACGT	2 cut(s)	334, 354
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	2 cut(s)	178, 272
MboI	GATC	2 cut(s)	176, 270
MboII	GAAGA	2 cut(s)	12, 293
MfeI	CAATTG	1 cut(s)	388
MflI	RGATCY	2 cut(s)	176, 270
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	168, 194, 210, 388
MlyI	GAGTC	1 cut(s)	380
MroXI	GAANNNNTTC	2 cut(s)	16, 285
MunI	CAATTG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	158, 244
NdeII	GATC	2 cut(s)	176, 270
NlaIV	GGNNCC	1 cut(s)	178
PdmI	GAANNNNTTC	2 cut(s)	16, 285
PfeI	GAWTC	4 cut(s)	65, 136, 286, 292
PkrI	GCNGC	3 cut(s)	163, 349, 386
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	176, 270
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	304
SatI	GCNGC	3 cut(s)	162, 348, 385
Sau3AI	GATC	2 cut(s)	176, 270
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	6 cut(s)	92, 193, 304, 324, 337, 357
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	382
Sse9I	AATT	4 cut(s)	168, 194, 210, 388
SsiI	CCGC	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	304
TaiI	ACGT	2 cut(s)	337, 357
TaqI	TCGA	2 cut(s)	63, 342
TasI	AATT	4 cut(s)	168, 194, 210, 388
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	4 cut(s)	65, 136, 286, 292
TscAI	CASTG	2 cut(s)	37, 75
TseI	GCWGC	3 cut(s)	161, 347, 384
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	37, 75
XapI	RAATTY	1 cut(s)	210
XmnI	GAANNNNTTC	2 cut(s)	16, 285
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.