RLG00000012460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000977
Physical Location & Seq
Forward (+)
19008506 .. 19012272
3767 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012460

Sequence Viewer

Length: 381 bp
ATGGAGAAAATGAAGAAGAGGATGAAAGATTTCAGGGCAAAGCTCGTTGAAGAGGCATATCATTGGATACTCATCTTCAGTCATACAAGGGTGTATTTTACTGGCAAAAACAGTGGCATGCTTTGCGCCAGGATTGATAATGTTGAAGGCATGGATGACTTCCCAGGTGTCTTGGAGTCCACAGAGTCGGAGATCGGCGCTCCAATTCGGCTAAGGATGACTAGCGACGCCAGACAGAGAGGGATCCCAGCAACTACTACTTCAATTTCTCAAATGAAATTTGGAAAATTACTGAGAGGAAAGAATGGTAAAACCTTAGATGACGAAGCAGCAAAGACTAAGGTCAACTCCGGCTCGCCAAGGGGAAACGGAAATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.07

Weight (kDa)

9.76

Isoelectric Point (pI)

25.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 238, 251
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 228
AgsI TTSAA 3 cut(s) 50, 146, 264
AjnI CCWGG 2 cut(s) 128, 163
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AlwI GGATC 2 cut(s) 238, 251
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 2 cut(s) 128, 200
BamHI GGATCC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 341
BciT130I CCWGG 2 cut(s) 130, 165
BciVI GTATCC 1 cut(s) 60
BfaI CTAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 201
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 2 cut(s) 130, 165
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 130, 165
BoxI GACNNNNGTC 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 163, 359
Bse1I ACTGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 71
BseBI CCWGG 2 cut(s) 130, 165
BseDI CCNNGG 2 cut(s) 163, 359
BseGI GGATG 3 cut(s) 27, 160, 222
BseJI GATNNNNATC 1 cut(s) 71
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 341
BseYI CCCAGC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 351
Bsp143I GATC 2 cut(s) 192, 243
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 245
BspPI GGATC 2 cut(s) 238, 251
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 163, 359
BssMI GATC 2 cut(s) 192, 243
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 359
Bst2UI CCWGG 2 cut(s) 130, 165
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 11, 45
BstACI GRCGYC 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 119, 356
BstDEI CTNAG 4 cut(s) 212, 293, 316, 339
BstF5I GGATG 3 cut(s) 27, 160, 222
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 128, 200
BstKTI GATC 2 cut(s) 195, 246
BstMBI GATC 2 cut(s) 192, 243
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 2 cut(s) 130, 165
BstNSI RCATGY 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 128, 163
BstV1I GCAGC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuI GTATCC 1 cut(s) 60
BtsCI GGATG 3 cut(s) 27, 160, 222
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 119, 356
CfoI GCGC 2 cut(s) 128, 200
CseI GACGC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 2 cut(s) 118, 151
CviJI RGCY 3 cut(s) 43, 211, 354
CviKI_1 RGCY 3 cut(s) 43, 211, 354
DdeI CTNAG 4 cut(s) 212, 293, 316, 339
DpnI GATC 2 cut(s) 194, 245
DpnII GATC 2 cut(s) 192, 243
Eam1104I CTCTTC 2 cut(s) 11, 45
EarI CTCTTC 2 cut(s) 11, 45
Eco130I CCWWGG 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 61
EcoRII CCWGG 2 cut(s) 128, 163
EcoT14I CCWWGG 1 cut(s) 359
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 121, 154
FaiI YATR 4 cut(s) 58, 84, 119, 152
FatI CATG 2 cut(s) 117, 150
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 3 cut(s) 34, 167, 229
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 1 cut(s) 222
GlaI GCGC 2 cut(s) 127, 199
GluI GCNGC 1 cut(s) 330
GsaI CCCAGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 128, 200
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 2 cut(s) 121, 154
Hin6I GCGC 2 cut(s) 126, 198
HinP1I GCGC 2 cut(s) 126, 198
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 2 cut(s) 176, 185
HpaII CCGG 1 cut(s) 351
Hpy166II GTNNAC 2 cut(s) 180, 346
Hpy188I TCNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 180, 346
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 4 cut(s) 212, 293, 316, 339
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 2 cut(s) 121, 154
HspAI GCGC 2 cut(s) 126, 198
Kzo9I GATC 2 cut(s) 192, 243
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 9 cut(s) 19, 87, 115, 142, 150, 177, 244, 261, 364
Lsp1109I GCAGC 1 cut(s) 341
MaeI CTAG 1 cut(s) 222
MalI GATC 2 cut(s) 194, 245
MboI GATC 2 cut(s) 192, 243
MboII GAAGA 4 cut(s) 25, 28, 62, 67
MflI RGATCY 1 cut(s) 243
MluCI AATT 4 cut(s) 204, 264, 278, 287
MlyI GAGTC 2 cut(s) 185, 194
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 4 cut(s) 12, 46, 233, 290
MroXI GAANNNNTTC 1 cut(s) 29
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 130, 165
MvaI CCWGG 2 cut(s) 130, 165
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 2 cut(s) 192, 243
NlaIII CATG 2 cut(s) 121, 154
NlaIV GGNNCC 1 cut(s) 245
NspI RCATGY 1 cut(s) 121
PaeI GCATGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 2 cut(s) 184, 193
PpsI GAGTC 2 cut(s) 184, 193
PshAI GACNNNNGTC 1 cut(s) 341
Psp6I CCWGG 2 cut(s) 128, 163
PspFI CCCAGC 1 cut(s) 247
PspGI CCWGG 2 cut(s) 128, 163
PspN4I GGNNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 243
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 192, 243
SchI GAGTC 2 cut(s) 185, 194
ScrFI CCNGG 2 cut(s) 130, 165
SetI ASST 4 cut(s) 45, 169, 317, 345
SphI GCATGC 1 cut(s) 121
Sse9I AATT 4 cut(s) 204, 264, 278, 287
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 128, 163
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 113
TasI AATT 4 cut(s) 204, 264, 278, 287
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 26, 38, 290
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 1 cut(s) 118
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.