Rmu_ssc0000213.1_g000085

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
Physical Location & Seq
Forward (+)
333092 .. 333607
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000213.1_g000085.1.cds

Sequence Viewer

Length: 516 bp
atggataaagttgatgataactggggaaaaaaattggtgatggcagatcaaattgacactgtcaatggcaatggtagcagtgatccgatggagaccacaacagctgaatatgaaagcaataaggaagcacttcttcttgaggacactggagaagttgagagactgagagctgaaaatgataatttgaagagagaaaaggaagcattggagagcgaaaaggaagcattggagagagaaaaggaagcattagaggatacattgaaggcagagatacttaaacatgaagatactctgttcgagtggaaaatgcacgatcagaagcttgatgcaatgcttgttgaagcgaagatgaagtctcaagctttagttgaggagttagattctcactccaagtttgaggaacaaatgctggaaacgcttaaagcttacaaaaaagattgcagaaaatgggagcaagacaataaagacattggtgcaaaatttgaagctgtaattttagctattagaaaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.82

Weight (kDa)

4.67

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 479
AgsI TTSAA 4 cut(s) 187, 262, 341, 485
AluBI AGCT 7 cut(s) 104, 170, 322, 362, 425, 488, 500
AluI AGCT 7 cut(s) 104, 170, 322, 362, 425, 488, 500
Alw26I GTCTC 3 cut(s) 86, 154, 360
AlwI GGATC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 479
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
Asp700I GAANNNNTTC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 49
BccI CCATC 2 cut(s) 34, 82
BciVI GTATCC 1 cut(s) 247
BcoDI GTCTC 3 cut(s) 86, 154, 360
BfuI GTATCC 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 158, 342
BsaI GGTCTC 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 26, 151
Bse3DI GCAATG 2 cut(s) 76, 336
BseMI GCAATG 2 cut(s) 76, 336
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 2 cut(s) 26, 151
BseRI GAGGAG 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 86, 154, 360
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 46, 82, 313
BspCNI CTCAG 1 cut(s) 156
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 76, 336
BsrI ACTGG 2 cut(s) 26, 151
BssMI GATC 3 cut(s) 46, 82, 313
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 164
BstKTI GATC 3 cut(s) 49, 85, 316
BstMAI GTCTC 3 cut(s) 86, 154, 360
BstMBI GATC 3 cut(s) 46, 82, 313
BstMWI GCNNNNNNNGC 2 cut(s) 75, 415
BsuI GTATCC 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 3 cut(s) 57, 85, 144
CviAII CATG 1 cut(s) 281
CviJI RGCY 7 cut(s) 104, 170, 322, 362, 425, 488, 500
CviKI_1 RGCY 7 cut(s) 104, 170, 322, 362, 425, 488, 500
DdeI CTNAG 1 cut(s) 164
DpnI GATC 3 cut(s) 48, 84, 315
DpnII GATC 3 cut(s) 46, 82, 313
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 86
FaeI CATG 1 cut(s) 284
FaiI YATR 2 cut(s) 111, 282
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FatI CATG 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 168
Hin1II CATG 1 cut(s) 284
HindIII AAGCTT 3 cut(s) 320, 360, 423
HinfI GANTC 1 cut(s) 380
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 87, 318
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 310, 329, 441, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 415
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 1 cut(s) 284
Kzo9I GATC 3 cut(s) 46, 82, 313
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 3 cut(s) 7, 132, 395
LweI GCATC 1 cut(s) 316
MalI GATC 3 cut(s) 48, 84, 315
MboI GATC 3 cut(s) 46, 82, 313
MboII GAAGA 4 cut(s) 125, 199, 296, 358
MluCI AATT 5 cut(s) 32, 51, 181, 479, 492
MnlI CCTC 4 cut(s) 133, 244, 364, 391
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 276, 420
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 75, 415
NdeII GATC 3 cut(s) 46, 82, 313
NlaIII CATG 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 380
PflFI GACNNNGTC 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 276, 420
Sau3AI GATC 3 cut(s) 46, 82, 313
SetI ASST 7 cut(s) 106, 172, 324, 364, 427, 490, 502
SfaNI GCATC 1 cut(s) 316
SmlI CTYRAG 2 cut(s) 137, 357
SmoI CTYRAG 2 cut(s) 137, 357
Sse9I AATT 5 cut(s) 32, 51, 181, 479, 492
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 297
TasI AATT 5 cut(s) 32, 51, 181, 479, 492
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 276, 420
Tru9I TTAA 2 cut(s) 276, 420
TscAI CASTG 3 cut(s) 64, 85, 151
TspDTI ATGAA 3 cut(s) 126, 297, 365
TspRI CASTG 3 cut(s) 64, 85, 151
Tth111I GACNNNGTC 1 cut(s) 59
XapI RAATTY 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.