Rh7AG267800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000977
Physical Location & Seq
Reverse (-)
27875309 .. 27877208
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG267800.1

Sequence Viewer

Length: 186 bp
ATGGAAGTAAACATGAAGGATGTGTGCAAGAGGTACAGATGTTTTCTGACTTCCCCAGATATTTGGGATCTGTTTGTGACCTACCTTGCTGAGTCTAAGGTGCCTCAGGATGAAGGTGAGTACCACAATCTTTCTATTGTTGCATTTGGCAATGCCGAAAAGGTGTATGAGAAAATGCCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.18

Weight (kDa)

4.83

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AclWI GGATC 1 cut(s) 75
AfaI GTAC 2 cut(s) 35, 122
AlwI GGATC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 105
BaeI ACNNNNGTAYC 2 cut(s) 25, 58
BanI GGYRCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 102
Bse21I CCTNAGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 157
BseGI GGATG 2 cut(s) 25, 115
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 3 cut(s) 81, 119, 171
BshNI GGYRCC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 82, 118, 172
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 157
BssMI GATC 1 cut(s) 67
BstDEI CTNAG 4 cut(s) 90, 96, 105, 180
BstF5I GGATG 2 cut(s) 25, 115
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 63
BstYI RGATCY 1 cut(s) 67
Bsu36I CCTNAGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 25, 115
Csp6I GTAC 2 cut(s) 34, 121
CviAII CATG 1 cut(s) 13
CviQI GTAC 2 cut(s) 34, 121
DdeI CTNAG 4 cut(s) 90, 96, 105, 180
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 105
FaeI CATG 1 cut(s) 16
FaiI YATR 2 cut(s) 14, 168
FatI CATG 1 cut(s) 12
FokI GGATG 2 cut(s) 32, 122
Hin1II CATG 1 cut(s) 16
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 10, 107
HpyCH4V TGCA 2 cut(s) 27, 143
HpyF3I CTNAG 4 cut(s) 90, 96, 105, 180
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 2 cut(s) 69, 92
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MflI RGATCY 1 cut(s) 67
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 2 cut(s) 24, 114
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 76
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 2 cut(s) 35, 122
RsaNI GTAC 2 cut(s) 34, 121
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 101
SetI ASST 6 cut(s) 35, 83, 87, 102, 118, 165
SgeI CNNG 5 cut(s) 25, 40, 68, 98, 119
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 29, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.