Rh1DG359000

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000977
Physical Location & Seq
Forward (+)
58286167 .. 58324252
38086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG359000.1

Sequence Viewer

Length: 804 bp
ATGGCGGCGGCTAACGCTCCGATCACCATGAAGGAGGCCTTAACGCTTCCGAGCGTTGGGATTAATCCGCAATTCATAACGTTTACCCATGTTACTATGGAGTCCGATAAGTACATATGCGTTCGGGAAACAGCGCCGCAGAATAGTATTGTGATTATTGATATGAGTATGCCGAATCAGCCTTTGAGGAGGCCTATCACCGCCGACTCTGCACTTATGAATCCAAACTCCAAAATCCTTGCTTTGAAAGCTCAAGTCCAGGGAACTACTCAGGACCACCTTCAAATTTTTAACATTGAGATGAAAGCAAAACTGAAATCACACCTTATGCCTGAGCAGAGGCCACAATTGGTTAAAGGGAACTTGCAACTCTTCTCGGTGGATCAGCAGCGCAGTCAAGCTCTTGAAGCGCATGCCGCATCCTTTGCCCAGTACAAGGTTCCAGGGAATGAAAATCCTTCCATTCTGATTTCCTTTGCCACCAAGACACTCAATGCTGGACAGATTACATCCAAGTTACATGTTATTGAGCTTGGTGCCCAGCCAGGGAAGCCATCTTTTACAAAGAAACAAGCAGATCTTTTCTTTCCTCCAGATTTTGCAGATGATTTCCCAGTTGCCATGCAGTACAGTAACAAGTCCTATACACCAACATTTATCAATAAGGGCCTCATATCTAAAGCTTACACTCCTAAACTCAGAGAAGCTGTTAAGCGTTTGCAAGCAGAGAAAAAGGAAGCCAAAATTGAGGATGAGCCACAAAAGGAGAAGTTTGAAGTTCACCAAGGAGAAAATGACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100
Pfam Domains
Protein Families
Clathrin Clathrin-link Clathrin_H_link Clathrin_propel

Protein Analysis

267

Amino Acids

29.76

Weight (kDa)

8.78

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clathrin_propel PF01394 20 - 55 2.9e-07 Clathrin propeller repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 536
AciI CCGC 6 cut(s) 5, 8, 68, 137, 201, 417
AclI AACGTT 1 cut(s) 80
AclWI GGATC 1 cut(s) 390
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 3 cut(s) 113, 434, 629
AfiI CCNNNNNNNGG 3 cut(s) 56, 436, 546
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 4 cut(s) 247, 284, 407, 776
AjnI CCWGG 3 cut(s) 258, 442, 544
AluBI AGCT 5 cut(s) 251, 401, 532, 683, 707
AluI AGCT 5 cut(s) 251, 401, 532, 683, 707
AlwI GGATC 1 cut(s) 390
AoxI GGCC 4 cut(s) 36, 191, 341, 667
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 285
AseI ATTAAT 1 cut(s) 63
AspLEI GCGC 3 cut(s) 136, 393, 412
AspS9I GGNCC 2 cut(s) 274, 667
AsuHPI GGTGA 3 cut(s) 16, 190, 773
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 541
BanI GGYRCC 1 cut(s) 536
BbvI GCAGC 1 cut(s) 400
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 3 cut(s) 260, 444, 546
BfoI RGCGCY 1 cut(s) 137
BglII AGATCT 1 cut(s) 577
BisI GCNGC 5 cut(s) 6, 9, 137, 389, 417
BlsI GCNGC 5 cut(s) 7, 10, 138, 390, 418
Bme1390I CCNGG 3 cut(s) 260, 444, 546
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 274, 667
BmiI GGNNCC 2 cut(s) 441, 538
BmrFI CCNGG 3 cut(s) 260, 444, 546
BmrI ACTGGG 2 cut(s) 424, 608
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 2 cut(s) 424, 608
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 259, 443, 545, 784
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 436, 546
Bse1I ACTGG 2 cut(s) 430, 614
BseBI CCWGG 3 cut(s) 260, 444, 546
BseDI CCNNGG 4 cut(s) 259, 443, 545, 784
BseGI GGATG 3 cut(s) 419, 509, 757
BseLI CCNNNNNNNGG 3 cut(s) 56, 436, 546
BseMII CTCAG 3 cut(s) 284, 324, 712
BseNI ACTGG 2 cut(s) 430, 614
BseRI GAGGAG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 1 cut(s) 400
BseYI CCCAGC 1 cut(s) 540
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 4 cut(s) 38, 193, 343, 669
BshNI GGYRCC 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 56, 436, 546
BsnI GGCC 4 cut(s) 38, 193, 343, 669
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 3 cut(s) 21, 382, 577
BspACI CCGC 6 cut(s) 5, 8, 68, 137, 201, 417
BspANI GGCC 4 cut(s) 38, 193, 343, 669
BspCNI CTCAG 3 cut(s) 283, 325, 711
BspLI GGNNCC 2 cut(s) 441, 538
BspPI GGATC 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 536
BsrI ACTGG 2 cut(s) 430, 614
BssECI CCNNGG 4 cut(s) 259, 443, 545, 784
BssMI GATC 3 cut(s) 21, 382, 577
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 3 cut(s) 260, 444, 546
Bst4CI ACNGT 1 cut(s) 632
Bst6I CTCTTC 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 414, 723
BstDEI CTNAG 3 cut(s) 270, 333, 698
BstF5I GGATG 3 cut(s) 419, 509, 757
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 3 cut(s) 136, 393, 412
BstKTI GATC 3 cut(s) 24, 385, 580
BstMBI GATC 3 cut(s) 21, 382, 577
BstMWI GCNNNNNNNGC 8 cut(s) 14, 178, 209, 248, 407, 416, 425, 550
BstNI CCWGG 3 cut(s) 260, 444, 546
BstNSI RCATGY 2 cut(s) 416, 524
BstSCI CCNGG 3 cut(s) 258, 442, 544
BstSLI GKGCMC 1 cut(s) 541
BstV1I GCAGC 1 cut(s) 400
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 4 cut(s) 38, 193, 343, 669
BtsCI GGATG 3 cut(s) 419, 509, 757
Cac8I GCNNGC 2 cut(s) 414, 723
CfoI GCGC 3 cut(s) 136, 393, 412
Cfr13I GGNCC 2 cut(s) 274, 667
Csp6I GTAC 3 cut(s) 112, 433, 628
CviAII CATG 5 cut(s) 28, 89, 413, 521, 622
CviQI GTAC 3 cut(s) 112, 433, 628
DdeI CTNAG 3 cut(s) 270, 333, 698
DpnI GATC 3 cut(s) 23, 384, 579
DpnII GATC 3 cut(s) 21, 382, 577
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 784
Eco147I AGGCCT 2 cut(s) 38, 193
Eco47I GGWCC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 667
EcoRII CCWGG 3 cut(s) 258, 442, 544
EcoT14I CCWWGG 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 5 cut(s) 31, 92, 416, 524, 625
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 564, 596
FatI CATG 5 cut(s) 27, 88, 412, 520, 621
FauNDI CATATG 1 cut(s) 116
Fnu4HI GCNGC 5 cut(s) 6, 9, 137, 389, 417
FokI GGATG 3 cut(s) 406, 496, 764
Fsp4HI GCNGC 5 cut(s) 6, 9, 137, 389, 417
GlaI GCGC 3 cut(s) 135, 392, 411
GluI GCNGC 5 cut(s) 6, 9, 137, 389, 417
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 4 cut(s) 38, 193, 343, 669
HhaI GCGC 3 cut(s) 136, 393, 412
Hin1II CATG 5 cut(s) 31, 92, 416, 524, 625
Hin6I GCGC 3 cut(s) 134, 391, 410
HinP1I GCGC 3 cut(s) 134, 391, 410
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 4 cut(s) 101, 175, 206, 220
HphI GGTGA 3 cut(s) 16, 190, 773
Hpy166II GTNNAC 2 cut(s) 84, 781
Hpy188I TCNGA 5 cut(s) 21, 51, 106, 468, 701
Hpy188III TCNNGA 4 cut(s) 125, 272, 404, 593
Hpy8I GTNNAC 2 cut(s) 84, 781
HpyAV CCTTC 3 cut(s) 25, 290, 468
HpyCH4III ACNGT 1 cut(s) 632
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 5 cut(s) 212, 367, 602, 625, 721
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 178, 209, 248, 407, 416, 425, 550
HpyF3I CTNAG 3 cut(s) 270, 333, 698
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 5 cut(s) 31, 92, 416, 524, 625
HspAI GCGC 3 cut(s) 134, 391, 410
Kzo9I GATC 3 cut(s) 21, 382, 577
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 428
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 91, 516, 632
MalI GATC 3 cut(s) 23, 384, 579
MboI GATC 3 cut(s) 21, 382, 577
MboII GAAGA 1 cut(s) 364
MfeI CAATTG 1 cut(s) 347
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 4 cut(s) 71, 285, 347, 744
MlyI GAGTC 2 cut(s) 110, 200
MnlI CCTC 7 cut(s) 28, 180, 183, 333, 600, 680, 742
MseI TTAA 5 cut(s) 41, 63, 291, 354, 711
MslI CAYNNNNRTG 1 cut(s) 299
MspR9I CCNGG 3 cut(s) 260, 444, 546
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 3 cut(s) 260, 444, 546
MwoI GCNNNNNNNGC 8 cut(s) 14, 178, 209, 248, 407, 416, 425, 550
NdeI CATATG 1 cut(s) 116
NdeII GATC 3 cut(s) 21, 382, 577
NlaIII CATG 5 cut(s) 31, 92, 416, 524, 625
NlaIV GGNNCC 2 cut(s) 441, 538
NspI RCATGY 2 cut(s) 416, 524
PaeI GCATGC 1 cut(s) 416
PceI AGGCCT 2 cut(s) 38, 193
PciI ACATGT 1 cut(s) 520
PfeI GAWTC 2 cut(s) 175, 220
PkrI GCNGC 5 cut(s) 7, 10, 138, 390, 418
PleI GAGTC 2 cut(s) 109, 200
PpsI GAGTC 2 cut(s) 109, 200
PscI ACATGT 1 cut(s) 520
PshBI ATTAAT 1 cut(s) 63
Psp1406I AACGTT 1 cut(s) 80
Psp6I CCWGG 3 cut(s) 258, 442, 544
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 3 cut(s) 258, 442, 544
PspN4I GGNNCC 2 cut(s) 441, 538
PspPI GGNCC 2 cut(s) 274, 667
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 3 cut(s) 113, 434, 629
RsaNI GTAC 3 cut(s) 112, 433, 628
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 5 cut(s) 41, 63, 291, 354, 711
SatI GCNGC 5 cut(s) 6, 9, 137, 389, 417
Sau3AI GATC 3 cut(s) 21, 382, 577
Sau96I GGNCC 2 cut(s) 274, 667
SchI GAGTC 2 cut(s) 110, 200
ScrFI CCNGG 3 cut(s) 260, 444, 546
SduI GDGCHC 1 cut(s) 541
SetI ASST 9 cut(s) 83, 253, 282, 327, 403, 441, 534, 685, 709
SfaNI GCATC 1 cut(s) 428
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
SphI GCATGC 1 cut(s) 416
Sse9I AATT 4 cut(s) 71, 285, 347, 744
SseBI AGGCCT 2 cut(s) 38, 193
SsiI CCGC 6 cut(s) 5, 8, 68, 137, 201, 417
StuI AGGCCT 2 cut(s) 38, 193
StyD4I CCNGG 3 cut(s) 258, 442, 544
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 1 cut(s) 632
TaiI ACGT 1 cut(s) 83
TasI AATT 4 cut(s) 71, 285, 347, 744
TatI WGTACW 3 cut(s) 111, 432, 627
TauI GCSGC 4 cut(s) 8, 11, 139, 419
TfiI GAWTC 2 cut(s) 175, 220
Tru1I TTAA 5 cut(s) 41, 63, 291, 354, 711
Tru9I TTAA 5 cut(s) 41, 63, 291, 354, 711
TseI GCWGC 1 cut(s) 388
TspDTI ATGAA 5 cut(s) 44, 64, 233, 317, 465
VpaK11BI GGWCC 1 cut(s) 274
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 1 cut(s) 285
XceI RCATGY 2 cut(s) 416, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.